minor fix

imperial-genomics-facility · Nov 16, 2023 · b6a3f94 · b6a3f94
1 parent bf093e6
commit b6a3f94
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/template/nextflow_template/nextflow_generic_conf_v0.0.1.conf b/template/nextflow_template/nextflow_generic_conf_v0.0.1.conf
@@ -92,7 +92,7 @@ timeline {
 singularity {
     autoMounts = true
     cacheDir = "$NEXTFLOW_SINGULARITY_CACHE_DIR"
-    runOptions = "--env _JAVA_OPTIONS='-XX:ParallelGCThreads=1'  -B {{ DIR_LIST }},$EPHEMERAL,$EPHEMERAL:/tmp,$EPHEMERAL:/var/tmp"
+    runOptions = "--env _JAVA_OPTIONS='-XX:ParallelGCThreads=1'  -B {{ DIR_LIST }},$EPHEMERAL,$VEP_CACHE_DIR,$SNPEFF_CACHE_DIR,$EPHEMERAL:/tmp,$EPHEMERAL:/var/tmp"
 }
 
 conda {