Update the upset plot

imbs-hl · Jul 17, 2024 · c17c403 · c17c403
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commit c17c403
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diff --git a/README.md b/README.md
@@ -19,8 +19,6 @@ Installation from Github:
 devtools::install_github("imbs-hl/fuseMLR")
 ```
 
-CRAN release coming soon.
-
 ### Usage
 For usage in R, see ?fuseMLR in R. Most importantly, see the Examples section. 
 
@@ -52,13 +50,16 @@ tl_meta_layer <- TrainMetaLayer$new(id = "meta_layer", train_study = train_study
 ```R
 train_data_geneexpr <- TrainData$new(id = "geneexpr",
                                      train_layer = tl_geneexpr,
-                                     data_frame = entities$training$geneexpr[-10, ])
+                                     data_frame = entities$training$geneexpr)
 train_data_proteinexpr <- TrainData$new(id = "proteinexpr",
                                         train_layer = tl_proteinexpr,
                                         data_frame = entities$training$proteinexpr)
 train_data_methylation <- TrainData$new(id = "methylation",
                                         train_layer = tl_methylation,
                                         data_frame = entities$training$methylation)
+
+# Upset plot of the study
+train_study$upset(order.by = "freq")
 ```
 
 #### Variable selection

diff --git a/data/entities.rda b/data/entities.rda
diff --git a/man/NewData.Rd b/man/NewData.Rd
diff --git a/man/NewLayer.Rd b/man/NewLayer.Rd
diff --git a/man/NewMetaLayer.Rd b/man/NewMetaLayer.Rd
diff --git a/man/NewStudy.Rd b/man/NewStudy.Rd
diff --git a/man/ParamLrner.Rd b/man/ParamLrner.Rd
diff --git a/man/ParamVarSel.Rd b/man/ParamVarSel.Rd
diff --git a/man/PredictData.Rd b/man/PredictData.Rd
diff --git a/man/PredictLayer.Rd b/man/PredictLayer.Rd
diff --git a/man/PredictMetaLayer.Rd b/man/PredictMetaLayer.Rd
diff --git a/man/PredictStudy.Rd b/man/PredictStudy.Rd
diff --git a/man/TrainData.Rd b/man/TrainData.Rd
diff --git a/man/TrainLayer.Rd b/man/TrainLayer.Rd
diff --git a/man/TrainMetaLayer.Rd b/man/TrainMetaLayer.Rd
diff --git a/man/TrainStudy.Rd b/man/TrainStudy.Rd