Update docs for iiasa/message_data#549

- add intersphinx configuration for plotnine.
- add |t|, |ya|, |yv| replacements to rest prolog.
- remove contents migrated upstream in #162
- address some sphinx nitpicks.

message_ix_models/model/transport/build.py

@@ -1,7 +1,4 @@
-"""Build MESSAGEix-Transport on a base model.
-
-.. autodata:: TEMPLATE
-"""
+"""Build MESSAGEix-Transport on a base model."""
 
 import logging
 from importlib import import_module

message_ix_models/model/transport/config.py

@@ -242,11 +242,11 @@ class Config(ConfigHelper):
     #: exogenous data.
     ssp: ssp_field = ssp_field(default=SSP_2017["2"])
 
-    #: :any:`.True` if a base model or MESSAGEix-Transport scenario (possibly with
+    #: :any:`True` if a base model or MESSAGEix-Transport scenario (possibly with
     #: solution data) is available.
     with_scenario: bool = False
 
-    #: :any:`.True` if solution data is available.
+    #: :any:`True` if solution data is available.
     with_solution: bool = False
 
     #: Work hours per year, used to compute the value of time.

message_ix_models/model/transport/operator.py

@@ -492,10 +492,10 @@ def groups_iea_eweb(technologies: List[Code]) -> Tuple[Groups, Groups, Dict]:
 
     2. Groups for aggregating MESSAGEix-Transport data. In particular:
 
-       - Labels for MESSAGEix-Transport transport modes (``t`` dimension) are aggregated
+       - Labels for MESSAGEix-Transport transport modes (|t| dimension) are aggregated
          to labels for IEA ``flow``.
 
-    3. Indexers for *dis*aggregating computed scaling factors; that is, reversing (2).
+    3. Indexers for *dis* aggregating computed scaling factors; that is, reversing (2).
     """
     g0: Groups = dict(flow={}, product={})
     g1: Groups = dict(t={})

message_ix_models/project/navigate/__init__.py

@@ -282,6 +282,6 @@ class Config:
     #: :data:`True` to use MESSAGEix-Materials (:mod:`.model.material`).
     material: bool = True
 
-    #: :data:`True` to use MESSAGEix-Transport (:mod:`.model.transport`) alongside
-    #: MESSAGEix-Buildings and MESSAGEix-Materials.
+    #: :data:`True` to use MESSAGEix-Transport (:mod:`message_data.model.transport`)
+    #: alongside MESSAGEix-Buildings and MESSAGEix-Materials.
     transport: bool = True