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@icgc-argo-workflows

ICGC ARGO Workflows

Home of the ICGC ARGO (Accelerate Research in Genomic Oncology) Data Platform Scientific Workflows

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  1. dna-seq-processing-wfs dna-seq-processing-wfs Public

    ICGC ARGO DNA-Seq Processing Workflow

    Nextflow 5 4

  2. sanger-wgs-variant-calling sanger-wgs-variant-calling Public

    ICGC-ARGO Sanger WGS Somatic Variant Calling Workflow

    Nextflow 4 3

  3. sanger-wxs-variant-calling sanger-wxs-variant-calling Public

    ICGC-ARGO Sanger WXS Somatic Variant Calling Workflow

    Nextflow 1

  4. gatk-mutect2-variant-calling gatk-mutect2-variant-calling Public

    ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow

    Nextflow 2

  5. argo-analysis-pipelines-overview argo-analysis-pipelines-overview Public

    Overview of ICGC-ARGO Analysis Pipelines

    1

  6. argo-reference-files argo-reference-files Public

    Reference files used by the ICGC-ARGO data analysis pipelines

Repositories

Showing 10 of 41 repositories
  • dnaalnqc Public

    ICGC-ARGO workflow for DNA-Seq alignment QC

    icgc-argo-workflows/dnaalnqc’s past year of commit activity
    mupad 4 MIT 1 1 0 Updated Nov 20, 2024
  • target_seq_bed_files Public

    A repository to capture genes targeted by WES and target-Seq from ICGC-ARGO projects

    icgc-argo-workflows/target_seq_bed_files’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 5, 2024
  • icgc-argo-mutational-signatures Public

    ICGC ARGO Mutational Signatures Workflow Packages

    icgc-argo-workflows/icgc-argo-mutational-signatures’s past year of commit activity
    Nextflow 2 MIT 0 0 0 Updated Oct 28, 2024
  • vcf-annotation Public

    ICGC ARGO Workflow for VCF Annotation

    icgc-argo-workflows/vcf-annotation’s past year of commit activity
    0 AGPL-3.0 0 0 0 Updated Oct 17, 2024
  • xml_variant_ingestion Public

    ICGC ARGO variant calling pipeline which digest xml to vcf variant format

    icgc-argo-workflows/xml_variant_ingestion’s past year of commit activity
    Nextflow 0 AGPL-3.0 0 0 0 Updated Oct 2, 2024
  • rnaaln Public

    ICGC ARGO Workflow for RNA-Seq Alignment

    icgc-argo-workflows/rnaaln’s past year of commit activity
    0 AGPL-3.0 0 0 1 Updated Sep 23, 2024
  • argo-modules Public

    ARGO specific modules using nf-core framework

    icgc-argo-workflows/argo-modules’s past year of commit activity
    HTML 0 MIT 0 3 1 Updated Sep 23, 2024
  • dnaaln Public

    ICGC ARGO Workflow for DNA-Seq Alignment

    icgc-argo-workflows/dnaaln’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Aug 20, 2024
  • prealnqc Public
    icgc-argo-workflows/prealnqc’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 25, 2024
  • dna-seq-processing-wfs Public

    ICGC ARGO DNA-Seq Processing Workflow

    icgc-argo-workflows/dna-seq-processing-wfs’s past year of commit activity
    Nextflow 5 AGPL-3.0 4 2 0 Updated Jul 23, 2024
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