Merge pull request #8 from iGEM-Engineering/fix-broken-genbank-tests

Update to match new NCBI record
iGEM-Engineering · Aug 20, 2024 · b5b2aac · b5b2aac
2 parents c30c9e6 + 228e6dd
commit b5b2aac
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Showing 7 changed files with 7 additions and 7 deletions.
diff --git a/scripts/test/test_files/NCBI_GenBank_imports.gb b/scripts/test/test_files/NCBI_GenBank_imports.gb
@@ -57,7 +57,7 @@ FEATURES             Location/Qualifiers
                      /strain="CVM N37069PS"
                      /isolation_source="Farm"
                      /db_xref="taxon:562"
-                     /country="USA"
+                     /geo_loc_name="USA"
                      /collection_date="20-Jan-2012"
      gene            complement(<1..115)
                      /locus_tag="PU64_23660"

diff --git a/scripts/test/test_files/distribution/distribution.gb b/scripts/test/test_files/distribution/distribution.gb
@@ -335,8 +335,8 @@ FEATURES             Location/Qualifiers
                      /label="pSB1C3"
      source          1..3242
                      /collection_date="20-Jan-2012"
-                     /country="USA"
                      /db_xref="taxon:562"
+                     /geo_loc_name="USA"
                      /isolation_source="Farm"
                      /mol_type="genomic DNA"
                      /organism="Escherichia coli"

diff --git a/scripts/test/test_files/distribution/distribution.nt b/scripts/test/test_files/distribution/distribution.nt
@@ -1875,8 +1875,8 @@
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0/range> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://purl.org/dc/terms/title> "Escherichia coli" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#collection_date> "20-Jan-2012" .
-<https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#country> "USA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#db_xref> "taxon:562" .
+<https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#geo_loc_name> "USA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#isolation_source> "Farm" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#mol_type> "genomic DNA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#organism> "Escherichia coli" .

diff --git a/scripts/test/test_files/imports/imports_test_ncbi.gb b/scripts/test/test_files/imports/imports_test_ncbi.gb
@@ -57,7 +57,7 @@ FEATURES             Location/Qualifiers
                      /strain="CVM N37069PS"
                      /isolation_source="Farm"
                      /db_xref="taxon:562"
-                     /country="USA"
+                     /geo_loc_name="USA"
                      /collection_date="20-Jan-2012"
      gene            complement(<1..115)
                      /locus_tag="PU64_23660"

diff --git a/scripts/test/test_files/imports/package.nt b/scripts/test/test_files/imports/package.nt
@@ -606,8 +606,8 @@
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0/range> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://purl.org/dc/terms/title> "Escherichia coli" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#collection_date> "20-Jan-2012" .
-<https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#country> "USA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#db_xref> "taxon:562" .
+<https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#geo_loc_name> "USA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#isolation_source> "Farm" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#mol_type> "genomic DNA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#organism> "Escherichia coli" .

diff --git a/scripts/test/test_files/views/package-expanded.nt b/scripts/test/test_files/views/package-expanded.nt
@@ -1862,8 +1862,8 @@
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0/range> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://purl.org/dc/terms/title> "Escherichia coli" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#collection_date> "20-Jan-2012" .
-<https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#country> "USA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#db_xref> "taxon:562" .
+<https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#geo_loc_name> "USA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#isolation_source> "Farm" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#mol_type> "genomic DNA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#organism> "Escherichia coli" .

diff --git a/scripts/test/test_files/views/package.nt b/scripts/test/test_files/views/package.nt
@@ -1491,8 +1491,8 @@
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0/range> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://purl.org/dc/terms/title> "Escherichia coli" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#collection_date> "20-Jan-2012" .
-<https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#country> "USA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#db_xref> "taxon:562" .
+<https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#geo_loc_name> "USA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#isolation_source> "Farm" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#mol_type> "genomic DNA" .
 <https://www.ncbi.nlm.nih.gov/nuccore/JWYZ01000115/annotation0> <http://sbols.org/genBankConversion#organism> "Escherichia coli" .