Docker

Dockerfile

@@ -4,28 +4,26 @@ FROM continuumio/miniconda3:latest
 # Set the working directory
 WORKDIR /
 
+# Copy the application code and requirements file into the container
+COPY requirements.txt .
+COPY *.py .
+
 # Update the package list and install any dependencies
 RUN apt-get update && apt-get install -y \
     curl git \
     && rm -rf /var/lib/apt/lists/*
 
 # Create a new conda environment with Python 3.10
 RUN conda create --name xmen python=3.10 -y
-
-# Activate the environment and ensure it persists
 SHELL ["conda", "run", "-n", "xmen", "/bin/bash", "-c"]
 
-# Copy the application code and requirements file into the container
-COPY requirements.txt .
-COPY *.py .
-
 # Install binary dependencies from conda
-RUN conda install -c conda-forge nmslib cymem murmurhash -y
+RUN conda install -n xmen -c conda-forge nmslib cymem murmurhash -y
 
 # Install pip dependencies
 RUN pip install --no-cache-dir -r requirements.txt
 
 EXPOSE 5000
 
 # Define the command to run the server with parameters
-CMD ["/opt/conda/envs/xmen/python", "run_snomed_german_recommender.py", "--no-gpu", "--port", "5000", "index"]
+CMD ["conda", "run", "-n", "xmen", "python3", "run_snomed_german_recommender.py", "--no-gpu", "--port", "5000", "index"]

README.md

@@ -8,8 +8,8 @@ Simple integration of pre-configured [xMEN](https://github.com/hpi-dhc/xmen) pip
 
 ### With Docker
 
-- `docker build -t xmen-inception`
-- ``
+- `docker build -t inception-xmen-snomed .`
+- `docker run -m=12g -p 5002:5000 -v "$(pwd)"/xmen_index/index:/index/ inception-xmen-snomed`
 
 ### Without Docker