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Add standard text for Warfarin #669

Closed
5 tasks done
tamslo opened this issue Nov 9, 2023 · 0 comments
Closed
5 tasks done

Add standard text for Warfarin #669

tamslo opened this issue Nov 9, 2023 · 0 comments
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P: App Project: App Study: Must have T: Feature Type: New Features

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@tamslo
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tamslo commented Nov 9, 2023

Warfarin is too complex to check automatically (see https://github.com/hpi-dhc/PharMe-Annotations/issues/5) – should add it as "Indeterminate" and add a descriptive standard text.

Genes to include (manually): CYP2C9 (already in CPIC lookups), VKORC1, CYP4F2, and CYP2C rs12777823

Text: “More information is needed to calculate your Warfarin dose. Consult [standard part]”

  • Add basic Warfarin entry with CPIC link to annotations (see https://github.com/hpi-dhc/PharMe-Annotations/issues/5)
  • Update Anni
  • Add custom Warfarin texts
  • Test what happens if genes present with genotypes for non-CPIC genes ➡️ as expected, not mapped (which is good)
  • Fix that genotype says "Not tested" for genes unknown to CPIC (it should just display the lab result)
@tamslo tamslo moved this from Todo to To Be Discussed w/ Aniwaa in PharMe Study Preparation Dec 7, 2023
@tamslo tamslo moved this from To Be Discussed w/ Aniwaa to Todo in PharMe Study Preparation Dec 11, 2023
@tamslo tamslo closed this as completed Dec 29, 2023
@github-project-automation github-project-automation bot moved this from Todo to Done (last 14 days) in PharMe Study Preparation Dec 29, 2023
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Labels
P: App Project: App Study: Must have T: Feature Type: New Features
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