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diff --git a/.github/empty.txt b/.github/empty.txt
diff --git a/.github/repos.txt b/.github/repos.txt
diff --git a/docs/_issues/2018-03-05-numba-numba-2790.md b/docs/_issues/2018-03-05-numba-numba-2790.md
diff --git a/docs/_issues/2018-07-24-pandas-dev-pandas-22040.md b/docs/_issues/2018-07-24-pandas-dev-pandas-22040.md
@@ -0,0 +1,8 @@
+---
+tags: ["Needs-Tests","alignment","data-analysis","data-science","flexible","pandas","python"]
+title: "Updating value of a single row of a column using loc or at fails"
+html_url: "https://github.com/pandas-dev/pandas/issues/22040"
+user: "abhinav-upadhyay"
+repo: "pandas-dev/pandas"
+---
+
diff --git a/docs/_issues/2018-09-26-pandas-dev-pandas-22836.md b/docs/_issues/2018-09-26-pandas-dev-pandas-22836.md
@@ -0,0 +1,8 @@
+---
+tags: ["Docs","alignment","data-analysis","data-science","flexible","pandas","python"]
+title: "DOC: Generating docs doesn't work if path has whitespaces"
+html_url: "https://github.com/pandas-dev/pandas/issues/22836"
+user: "datapythonista"
+repo: "pandas-dev/pandas"
+---
+
diff --git a/docs/_issues/2018-10-15-pandas-dev-pandas-23164.md b/docs/_issues/2018-10-15-pandas-dev-pandas-23164.md
@@ -0,0 +1,8 @@
+---
+tags: ["Docs","alignment","cut","data-analysis","data-science","flexible","pandas","python"]
+title: "pandas.cut: the 'include_lowest' argument isn't behaving as documented"
+html_url: "https://github.com/pandas-dev/pandas/issues/23164"
+user: "evarga"
+repo: "pandas-dev/pandas"
+---
+
diff --git a/docs/_issues/2019-05-20-pandas-dev-pandas-26475.md b/docs/_issues/2019-05-20-pandas-dev-pandas-26475.md
@@ -0,0 +1,8 @@
+---
+tags: ["Bug","Complex","Groupby","Needs-Tests","alignment","data-analysis","data-science","flexible","pandas","python"]
+title: "df.groupby on a column with complex numbers is broken"
+html_url: "https://github.com/pandas-dev/pandas/issues/26475"
+user: "basnijholt"
+repo: "pandas-dev/pandas"
+---
+
diff --git a/docs/_issues/2020-08-13-jupyterlab-jupyterlab-8828.md b/docs/_issues/2020-08-13-jupyterlab-jupyterlab-8828.md
diff --git a/docs/_issues/2021-04-01-pandas-dev-pandas-40735.md b/docs/_issues/2021-04-01-pandas-dev-pandas-40735.md
diff --git a/docs/_issues/2021-05-16-matplotlib-matplotlib-20243.md b/docs/_issues/2021-05-16-matplotlib-matplotlib-20243.md
diff --git a/docs/_issues/2022-06-06-sunpy-sunpy-6200.md b/docs/_issues/2022-06-06-sunpy-sunpy-6200.md
diff --git a/docs/_issues/2022-08-15-jonescompneurolab-hnn-core-544.md b/docs/_issues/2022-08-15-jonescompneurolab-hnn-core-544.md
diff --git a/docs/_issues/2022-08-15-multiscale-muscle3-102.md b/docs/_issues/2022-08-15-multiscale-muscle3-102.md
@@ -0,0 +1,8 @@
+---
+tags: ["documentation"]
+title: "Editable pip install is not working correctly"
+html_url: "https://github.com/multiscale/muscle3/issues/102"
+user: "maarten-ic"
+repo: "multiscale/muscle3"
+---
+
diff --git a/docs/_issues/2022-10-24-multiscale-muscle3-120.md b/docs/_issues/2022-10-24-multiscale-muscle3-120.md
@@ -0,0 +1,7 @@
+---
+title: "Uninformative error message if connection to manager fails"
+html_url: "https://github.com/multiscale/muscle3/issues/120"
+user: "LourensVeen"
+repo: "multiscale/muscle3"
+---
+
diff --git a/docs/_issues/2022-11-06-multiscale-muscle3-123.md b/docs/_issues/2022-11-06-multiscale-muscle3-123.md
@@ -0,0 +1,7 @@
+---
+title: "Python version not working on Windows"
+html_url: "https://github.com/multiscale/muscle3/issues/123"
+user: "LourensVeen"
+repo: "multiscale/muscle3"
+---
+
diff --git a/docs/_issues/2022-11-10-multiscale-muscle3-130.md b/docs/_issues/2022-11-10-multiscale-muscle3-130.md
@@ -0,0 +1,7 @@
+---
+title: "Components, kernels and compute elements"
+html_url: "https://github.com/multiscale/muscle3/issues/130"
+user: "LourensVeen"
+repo: "multiscale/muscle3"
+---
+
diff --git a/docs/_issues/2023-01-19-pandas-dev-pandas-50864.md b/docs/_issues/2023-01-19-pandas-dev-pandas-50864.md
diff --git a/docs/_issues/2023-01-28-pandas-dev-pandas-51044.md b/docs/_issues/2023-01-28-pandas-dev-pandas-51044.md
diff --git a/docs/_issues/2023-01-31-multiscale-muscle3-175.md b/docs/_issues/2023-01-31-multiscale-muscle3-175.md
@@ -0,0 +1,8 @@
+---
+tags: ["enhancement"]
+title: "Add a `current` symlink to the current run directory when launching a simulation"
+html_url: "https://github.com/multiscale/muscle3/issues/175"
+user: "maarten-ic"
+repo: "multiscale/muscle3"
+---
+
diff --git a/docs/_issues/2023-02-07-multiscale-muscle3-190.md b/docs/_issues/2023-02-07-multiscale-muscle3-190.md
@@ -0,0 +1,7 @@
+---
+title: "Make ymmsl documentation easier to find"
+html_url: "https://github.com/multiscale/muscle3/issues/190"
+user: "maarten-ic"
+repo: "multiscale/muscle3"
+---
+
diff --git a/docs/_issues/2023-07-10-multiscale-muscle3-257.md b/docs/_issues/2023-07-10-multiscale-muscle3-257.md
@@ -0,0 +1,8 @@
+---
+tags: ["documentation"]
+title: "VSCode debugging recipe (python)"
+html_url: "https://github.com/multiscale/muscle3/issues/257"
+user: "AreWeDreaming"
+repo: "multiscale/muscle3"
+---
+
diff --git a/docs/_issues/2023-07-28-kblin-ncbi-acc-download-25.md b/docs/_issues/2023-07-28-kblin-ncbi-acc-download-25.md
@@ -0,0 +1,8 @@
+---
+tags: ["help-wanted"]
+title: "Document best use cases versus alternatives"
+html_url: "https://github.com/kblin/ncbi-acc-download/issues/25"
+user: "peterjc"
+repo: "kblin/ncbi-acc-download"
+---
+
diff --git a/docs/_issues/2023-08-01-multiscale-muscle3-262.md b/docs/_issues/2023-08-01-multiscale-muscle3-262.md
@@ -0,0 +1,7 @@
+---
+title: "Python Grid class should have __str__()"
+html_url: "https://github.com/multiscale/muscle3/issues/262"
+user: "LourensVeen"
+repo: "multiscale/muscle3"
+---
+
diff --git a/docs/_issues/2023-08-17-PyTorchLightning-metrics-2003.md b/docs/_issues/2023-08-17-PyTorchLightning-metrics-2003.md
diff --git a/docs/_issues/2023-10-28-multiscale-muscle3-275.md b/docs/_issues/2023-10-28-multiscale-muscle3-275.md
@@ -0,0 +1,7 @@
+---
+title: "mypy doesn't see InstanceFlags"
+html_url: "https://github.com/multiscale/muscle3/issues/275"
+user: "LourensVeen"
+repo: "multiscale/muscle3"
+---
+
diff --git a/docs/_issues/2023-11-02-multiscale-muscle3-276.md b/docs/_issues/2023-11-02-multiscale-muscle3-276.md
@@ -0,0 +1,7 @@
+---
+title: "InstanceManager crashes on shutdown if no stderr.txt is present"
+html_url: "https://github.com/multiscale/muscle3/issues/276"
+user: "LourensVeen"
+repo: "multiscale/muscle3"
+---
+
diff --git a/docs/_issues/2023-11-28-multiscale-muscle3-277.md b/docs/_issues/2023-11-28-multiscale-muscle3-277.md
@@ -0,0 +1,7 @@
+---
+title: "Broken link: the link to the code of conduct in README.md"
+html_url: "https://github.com/multiscale/muscle3/issues/277"
+user: "Elisa-on-GitHub"
+repo: "multiscale/muscle3"
+---
+
diff --git a/docs/_issues/2024-02-23-CLIMADA-project-climada_python-854.md b/docs/_issues/2024-02-23-CLIMADA-project-climada_python-854.md
@@ -0,0 +1,8 @@
+---
+tags: ["enhancement","help-wanted"]
+title: "Create a function to store the local exceedence intensity maps as netcdf file"
+html_url: "https://github.com/CLIMADA-project/climada_python/issues/854"
+user: "simonameiler"
+repo: "CLIMADA-project/climada_python"
+---
+
diff --git a/docs/_issues/2024-04-04-scverse-scvi-tools-2687.md b/docs/_issues/2024-04-04-scverse-scvi-tools-2687.md
diff --git a/docs/_issues/2024-05-14-nci-scores-361.md b/docs/_issues/2024-05-14-nci-scores-361.md
@@ -0,0 +1,8 @@
+---
+tags: ["climate","contingency-table","dask","forecast-evaluation","forecast-verification","forecasting","model-validation","oceanography","pandas","python","verification","weather","xarray"]
+title: "Improved visual rendering of contingency tables"
+html_url: "https://github.com/nci/scores/issues/361"
+user: "tennlee"
+repo: "nci/scores"
+---
+
diff --git a/docs/_issues/2024-06-21-freqtrade-freqtrade-10348.md b/docs/_issues/2024-06-21-freqtrade-freqtrade-10348.md
diff --git a/docs/_issues/2024-07-20-jupyterlab-jupyterlab-16620.md b/docs/_issues/2024-07-20-jupyterlab-jupyterlab-16620.md
@@ -0,0 +1,8 @@
+---
+tags: ["bug","help-wanted","jupyter","jupyterlab"]
+title: "Selecting es-ES (Spanish) also disables it-IT (Italian) "
+html_url: "https://github.com/jupyterlab/jupyterlab/issues/16620"
+user: "gybranperez"
+repo: "jupyterlab/jupyterlab"
+---
+
diff --git a/docs/_issues/2024-07-25-pandas-dev-pandas-59309.md b/docs/_issues/2024-07-25-pandas-dev-pandas-59309.md
diff --git a/docs/_issues/2024-07-29-PyTorchLightning-metrics-2659.md b/docs/_issues/2024-07-29-PyTorchLightning-metrics-2659.md
@@ -0,0 +1,8 @@
+---
+tags: ["analyses","bug-/-fix","data-science","deep-learning","help-wanted","machine-learning","metrics","python","pytorch","v1.4.x"]
+title: "`higher_is_better` for `InfoLM` should change depending on `information_measure`"
+html_url: "https://github.com/Lightning-AI/torchmetrics/issues/2659"
+user: "grahamannett"
+repo: "PyTorchLightning/metrics"
+---
+
diff --git a/docs/_issues/2024-07-29-networkx-networkx-7580.md b/docs/_issues/2024-07-29-networkx-networkx-7580.md
@@ -0,0 +1,8 @@
+---
+tags: ["Good-First-Issue","complex-networks","graph-algorithms","graph-analysis","graph-generation","graph-theory","graph-visualization","python","spec-0","spec-1","spec-4","type-Documentation"]
+title: "compute a random_regular_graph(N,K) but the adjacency matrix is totally wrong"
+html_url: "https://github.com/networkx/networkx/issues/7580"
+user: "BitBute01"
+repo: "networkx/networkx"
+---
+
diff --git a/docs/_issues/2024-07-29-tardis-sn-tardis-2757.md b/docs/_issues/2024-07-29-tardis-sn-tardis-2757.md
@@ -0,0 +1,8 @@
+---
+tags: ["astrophysics","easy","python","radiative-transfer","science","supernova"]
+title: "Make better implementations for `fast_array_util.py  "
+html_url: "https://github.com/tardis-sn/tardis/issues/2757"
+user: "wkerzendorf"
+repo: "tardis-sn/tardis"
+---
+
diff --git a/docs/_issues/2024-07-30-numba-numba-9677.md b/docs/_issues/2024-07-30-numba-numba-9677.md
@@ -0,0 +1,8 @@
+---
+tags: ["bug---incorrect-behavior","compiler","cuda","llvm","numba","numpy","parallel","python"]
+title: "typed.List __repr__() "
+html_url: "https://github.com/numba/numba/issues/9677"
+user: "seibert"
+repo: "numba/numba"
+---
+
diff --git a/docs/_issues/2024-07-31-bluesky-bluesky-1773.md b/docs/_issues/2024-07-31-bluesky-bluesky-1773.md
@@ -0,0 +1,8 @@
+---
+tags: ["bluesky","dataacquisition","hackathon","low-priority","maintenance","python","question"]
+title: " Repo chores: old issues "
+html_url: "https://github.com/bluesky/bluesky/issues/1773"
+user: "stan-dot"
+repo: "bluesky/bluesky"
+---
+
diff --git a/docs/_issues/2024-08-01-matplotlib-matplotlib-28643.md b/docs/_issues/2024-08-01-matplotlib-matplotlib-28643.md
@@ -0,0 +1,8 @@
+---
+tags: ["Difficulty-Medium","Good-first-issue","data-science","data-visualization","gtk","hacktoberfest","matplotlib","plotting","python","qt","tk","wx"]
+title: "[Bug]: modifer keys not correctly handeled with tk on windows"
+html_url: "https://github.com/matplotlib/matplotlib/issues/28643"
+user: "alan-isaac"
+repo: "matplotlib/matplotlib"
+---
+
diff --git a/docs/_issues/2024-08-01-streamlit-streamlit-9198.md b/docs/_issues/2024-08-01-streamlit-streamlit-9198.md
@@ -0,0 +1,8 @@
+---
+tags: ["data-analysis","data-science","data-visualization","deep-learning","developer-tools","featuremultipage-apps","machine-learning","priorityP3","python","statusconfirmed","streamlit","typebug"]
+title: "stSidebarNav items should be disabled when app is disconnected"
+html_url: "https://github.com/streamlit/streamlit/issues/9198"
+user: "sfc-gh-pfinnigan"
+repo: "streamlit/streamlit"
+---
+
diff --git a/docs/_issues/2024-08-02-multiscale-muscle3-298.md b/docs/_issues/2024-08-02-multiscale-muscle3-298.md
@@ -0,0 +1,7 @@
+---
+title: "Switch to pyproject.toml"
+html_url: "https://github.com/multiscale/muscle3/issues/298"
+user: "LourensVeen"
+repo: "multiscale/muscle3"
+---
+