sections pt and test

tests/data.json

@@ -0,0 +1 @@
+null

tests/lenses.http

@@ -133,6 +133,7 @@ GET https://gravitate-health.lst.tfo.upm.es/epi/api/fhir/Composition?subject=mp9
 
 ### Test Lens: Pregnancy
 POST https://gravitate-health.lst.tfo.upm.es/focusing/focus/processedbundledovato-en-49178f16170ee8a6bc2a4361c1748d5f?preprocessors=preprocessing-service-manual&lenses=lens-selector-mvp2_pregnancy&patientIdentifier=Pedro-1
+Accept: application/json
 
 
 ### that worked
@@ -250,3 +251,28 @@ POST http://gravitate-health.lst.tfo.upm.es/focusing/focus/PT-Glimepirida-Generi
 ### testing 
 POST  https://fosps.gravitatehealth.eu/focusing/focus/PT-Glimepirida-Generis-processed-bundle?patientIdentifier=alicia-1
 
+
+
+##### tttt
+POST https://gravitate-health.lst.tfo.upm.es/focusing/focus/bundlepackageleaflet-es-94a96e39cfdcd8b378d12dd4063065f9?preprocessors=preprocessing-service-manual&patientIdentifier=alicia-1
+Accept: application/json
+
+
+
+### preproc
+
+POST https://gravitate-health.lst.tfo.upm.es/focusing/preprocessing/bundlepackageleaflet-es-da0fc2395ce219262dfd4f0c9a9f72e1?preprocessors=preprocessing-service-mvp2
+Accept: application/json
+
+
+##### testing testing-preprocessor.py
+POST https://gravitate-health.lst.tfo.upm.es/focusing/preprocessing/bundlepackageleaflet-es-29436a85dac3ea374adb3fa64cfd2578?preprocessors=preprocessing-service-mvp2
+Accept: application/json
+
+
+### preproc
+
+POST https://gravitate-health.lst.tfo.upm.es/focusing/preprocessing/bundlepackageleaflet-es-af1953635c28668e0d454e0740fcb36f?preprocessors=preprocessing-service-mvp2
+Accept: application/json
+
+

tests/new-tests.http

@@ -0,0 +1,5 @@
+### condition lens
+POST https://gravitate-health.lst.tfo.upm.es/focusing/focus/bundlepackageleaflet-en-94a96e39cfdcd8b378d12dd4063065f9?preprocessors=preprocessing-service-manual&patientIdentifier=alicia-1
+content-type: application/json
+Accept: application/json
+#Accept: text/html

tests/output.csv

@@ -0,0 +1,25 @@
+epid,extension+
+bundlepackageleaflet-da-dcaa4d32aa6658a8df831551503e52ee, No extension
+bundlepackageleaflet-es-da0fc2395ce219262dfd4f0c9a9f72e1, Has extension
+FK40274, No extension
+bundlepackageleaflet-da-a38f06714db0c27b2ba704652e3f08c5, No extension
+bundlepackageleaflet-en-dcaa4d32aa6658a8df831551503e52ee, Has extension
+bundlepackageleaflet-en-a64c0ccb066e7fdf6ba2d86dcd8bda5e, Has extension
+bundlepackageleaflet-en-2f37d696067eeb6daf1111cfc3272672, Has extension
+bundlepackageleaflet-es-e762a2f54b0b24fca4744b1bb7524a5b, Has extension
+bundlepackageleaflet-es-29436a85dac3ea374adb3fa64cfd2578, Has extension
+FK45691, No extension
+PT-Glimepirida-Generis, No extension
+bundlepackageleaflet-en-04c9bd6fb89d38b2d83eced2460c4dc1, Has extension
+bundlepackageleaflet-en-b62cc095c7be2116a8a65157286376a3, Has extension
+bundlepackageleaflet-es-4fab126d28f65a1084e7b50a23200363, Has extension
+bundlepackageleafletxyntha, No extension
+bundlepackageleaflet-en-534e209eb0a3ff60437639cb2015316f, No extension
+bundlepackageleaflet-en-e2464a7d3d627b9df9bef5bc3b263fb4, Has extension
+bundlepackageleaflet-es-af1953635c28668e0d454e0740fcb36f, No extension
+FK37812, No extension
+bundlepackageleaflet-en-94a96e39cfdcd8b378d12dd4063065f9, Has extension
+bundlepackageleaflet-pt-49178f16170ee8a6bc2a4361c1748d5f, No extension
+bundlepackageleaflet-es-dcaa4d32aa6658a8df831551503e52ee, Has extension
+bundlepackageleaflet-es-2f37d696067eeb6daf1111cfc3272672, Has extension
+PT-GLUCOPHAGE, No extension

tests/testing-preprocessor.py

@@ -1,31 +1,11 @@
+import json
+
 import requests
 
 headers = {"Content-Type": "application/json", "Accept": "application/json"}
 
-
-def word_in_json(json_obj, word):
-    """
-    Check if a word exists anywhere in a JSON object/dict.
-
-    Args:
-        json_obj (dict or list): The JSON object to search.
-        word (str): The word to search for.
-
-    Returns:
-        bool: True if the word is found, False otherwise.
-    """
-    if isinstance(json_obj, dict):
-        for key, value in json_obj.items():
-            if word_in_json(value, word):  # Recursive check in value
-                return True
-    elif isinstance(json_obj, list):
-        for item in json_obj:
-            if word_in_json(item, word):  # Recursive check in each item
-                return True
-    elif isinstance(json_obj, str):  # Check if word is in string
-        if word in json_obj:
-            return True
-    return False
+file = open("output.csv", "w")
+file.write("epid" + ",extension+\n")
 
 
 def test_preprocessor(epiid, language):
@@ -41,12 +21,22 @@ def test_preprocessor(epiid, language):
 
     composition = result["entry"][0]
     ##  print(composition)
-    extension_exist = word_in_json(composition, "extension")
-    print(extension_exist)  # Output: ?
+    json_string = json.dumps(composition)
+
+    extension_exist = (
+        "https://hl7.eu/fhir/ig/gravitate-health/StructureDefinition/HtmlElementLink"
+        in json_string
+    )
+
+    # print(extension_exist)  # Output: ?
     # print(word_in_json(composition, "composition"))  # Output: True
     # print(word_in_json(composition, "whites"))  # Output: True
     if not extension_exist:
         print(epiid, "No extension")
+        file.write(epiid + ", No extension\n")
+    else:
+        file.write(epiid + ", Has extension\n")
+
     return 1
 
 
@@ -76,8 +66,9 @@ def fetch_paginated_data(
             id_ = bundle["id"]
             #  print(id_)
             language = composition.get("language")
-            if not language:
-                pass
+            # print(language)
+            if not language or language in ["no", "fi", "ja"]:
+                continue
             category = composition.get("category")
             if category is None:
                 test_preprocessor(id_, language)
@@ -102,3 +93,4 @@ def fetch_paginated_data(
 
 fetch_paginated_data()
 # test_preprocessor("bundlepackageleaflet-en-b62cc095c7be2116a8a65157286376a3", "en")
+file.close()