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| import re | ||
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| # Open the PDF file | ||
| def replace_unicode_character(input_string, character_to_replace, replacement_char): | ||
| return input_string.replace(character_to_replace, replacement_char) | ||
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| def parse_html(html_content): | ||
| new_html_content = [] | ||
| endidx = -1 | ||
| startidx = 0 | ||
| pasr = html_content.split("\n") | ||
| for idx, line in enumerate(pasr): | ||
| line = replace_unicode_character(line, chr(61607) + " ", "*") | ||
| line = replace_unicode_character(line, "• \n", "*") | ||
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| new_html_content.append(line) | ||
| if "PATIENT INFORMATION LEAFLET" in line: # ema and UK | ||
| # print(line) | ||
| startidx = idx | ||
| if ( | ||
| "Detailed information on this medicine is available on the European Medicines Agency web site: " | ||
| in line | ||
| ): | ||
| # print(line) | ||
| endidx = idx + 5 | ||
| break | ||
| print(startidx, endidx) | ||
| return "\n".join(new_html_content[startidx:endidx]) | ||
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| def cleanhtml(raw_html): | ||
| raw_html = re.sub(r"\*\n", "* ", raw_html) | ||
| raw_html = re.sub(r"\d{2,3}\s\n", "", raw_html) | ||
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| raw_html = re.sub(r"(\d\.)\s\n", r"\1 ", raw_html) | ||
| # raw_html = re.sub(r"\so\s", "* ", raw_html) | ||
| raw_html = re.sub(r"-\s\n", "- ", raw_html) | ||
| raw_html = re.sub(r"•\s\n", "* ", raw_html) | ||
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| return raw_html | ||
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| def split_parts(clean_content): | ||
| second_part = re.findall( | ||
| r"What is in this leaflet\S?\s{0,2}\n{1,2}\s{0,2}1. .+\n2. .+\n3. .+\n4. .+\n5. .+\n6. .+\n", | ||
| clean_content, | ||
| )[0] | ||
| first_part = re.split( | ||
| r"What is in this leaflet\S?\s{0,2}\n{1,2}\s{0,2}1. .+\n2. .+\n3. .+\n4. .+\n5. .+\n6. .+\n", | ||
| clean_content, | ||
| )[0] | ||
| third_part = re.split( | ||
| r"What is in this leaflet\S?\s{0,2}\n{1,2}\s{0,2}1. .+\n2. .+\n3. .+\n4. .+\n5. .+\n6. .+\n", | ||
| clean_content, | ||
| )[1] | ||
| return first_part, second_part, third_part |
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24 changes: 24 additions & 0 deletions
24
input/fsh/examples/rawEPI/calchichew-d3f-ema-automatic/AdministrableProductDefinition.fsh
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| Instance: ap-a64c0ccb066e7fdf6ba2d86dcd8bda5e | ||
| InstanceOf: AdministrableProductDefinitionUvEpi | ||
| Title: "Administrable product Calcichew-D3 Forte" | ||
| Description: "Administrable product Calcichew-D3 Forte" | ||
| Usage: #inline | ||
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| * identifier.system = "https://spor.ema.europa.eu/pmswi" | ||
| * identifier.value = "gh-1" | ||
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| * status = #active | ||
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| * formOf = Reference(mp04c5df8b1b688f62331c672bbd9ffa97) | ||
| * administrableDoseForm = $spor-rms#100000073684 "Chewable tablet" | ||
| * unitOfPresentation = $spor-rms#200000002152 "Tablet" | ||
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| * producedFrom = Reference(mid-a64c0ccb066e7fdf6ba2d86dcd8bda5e) | ||
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| * routeOfAdministration.code = $spor-rms#100000073619 "Oral use" | ||
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| * routeOfAdministration.targetSpecies.code = $spor-rms#100000109093 "Human" |
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input/fsh/examples/rawEPI/calchichew-d3f-ema-automatic/Bundle.fsh
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| @@ -0,0 +1,79 @@ | ||
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| RuleSet: 9e23fbe86c1f883dff598a2d9fed332eBundleRuleset | ||
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| // Ingredient | ||
| * entry[+].fullUrl = "http://hl7.eu/fhir/ig/gravitate-health/Ingredient/ingredient-for-calchichewd3f-calciumcarbonate" | ||
| * entry[=].resource = ingredient-for-calchichewd3f-calciumcarbonate | ||
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| // Ingredient | ||
| * entry[+].fullUrl = "http://hl7.eu/fhir/ig/gravitate-health/Ingredient/ingredient-for-calchichewd3f-cholecalciferol" | ||
| * entry[=].resource = ingredient-for-calchichewd3f-cholecalciferol | ||
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| // AdministrableProductDefinition | ||
| * entry[+].fullUrl = "http://hl7.eu/fhir/ig/gravitate-health/AdministrableProductDefinition/ap-a64c0ccb066e7fdf6ba2d86dcd8bda5e" | ||
| * entry[=].resource = ap-a64c0ccb066e7fdf6ba2d86dcd8bda5e | ||
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| // RegulatedAuthorization | ||
| * entry[+].fullUrl = "http://hl7.eu/fhir/ig/gravitate-health/RegulatedAuthorization/authorizationa64c0ccb066e7fdf6ba2d86dcd8bda5e0" | ||
| * entry[=].resource = authorizationa64c0ccb066e7fdf6ba2d86dcd8bda5e0 | ||
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| // Organization | ||
| * entry[+].fullUrl = "http://hl7.eu/fhir/ig/gravitate-health/Organization/mah-d21dfe8c15312e8b8bf0b7774b510a9d" | ||
| * entry[=].resource = mah-d21dfe8c15312e8b8bf0b7774b510a9d | ||
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| // PackagedProductDefinition | ||
| * entry[+].fullUrl = "http://hl7.eu/fhir/ig/gravitate-health/PackagedProductDefinition/ppd-a46ff5cb1a9568d59a1669fd597f58bf" | ||
| * entry[=].resource = ppd-a46ff5cb1a9568d59a1669fd597f58bf | ||
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| // MedicinalProductDefinition | ||
| * entry[+].fullUrl = "http://hl7.eu/fhir/ig/gravitate-health/MedicinalProductDefinition/mp04c5df8b1b688f62331c672bbd9ffa97" | ||
| * entry[=].resource = mp04c5df8b1b688f62331c672bbd9ffa97 | ||
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| // ManufacturedItemDefinition | ||
| * entry[+].fullUrl = "http://hl7.eu/fhir/ig/gravitate-health/ManufacturedItemDefinition/mid-a64c0ccb066e7fdf6ba2d86dcd8bda5e" | ||
| * entry[=].resource = mid-a64c0ccb066e7fdf6ba2d86dcd8bda5e | ||
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| Instance: bundlepackageleaflet-en-a64c0ccb066e7fdf6ba2d86dcd8bda5e | ||
| InstanceOf: BundleUvEpi | ||
| Title: "ePI document Bundle for Calcichew-D3 Forte Package Leaflet for language en" | ||
| Description: "ePI document Bundle for Calcichew-D3 Forte Package Leaflet for language en" | ||
| Usage: #example | ||
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| * identifier.system = "https://www.gravitatehealth.eu/sid/doc" | ||
| * identifier.value = "gh-1" | ||
| * type = #document | ||
| * timestamp = "2023-06-27T10:09:22Z" | ||
| * language = #en | ||
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| // Composition | ||
| * entry[0].fullUrl = "http://hl7.eu/fhir/ig/gravitate-health/Composition/composition-en-04c5df8b1b688f62331c672bbd9ffa97" | ||
| * entry[0].resource = composition-en-04c5df8b1b688f62331c672bbd9ffa97 | ||
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| * insert 9e23fbe86c1f883dff598a2d9fed332eBundleRuleset |
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input/fsh/examples/rawEPI/calchichew-d3f-ema-automatic/Ingredient.fsh
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| Instance: ingredient-for-calchichewd3f-calciumcarbonate | ||
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| InstanceOf: IngredientUvEpi | ||
| Title: "Ingredient-active Calcium Carbonate" | ||
| Description: "Calcium Carbonate" | ||
| Usage: #inline | ||
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| * identifier.system = $ginas | ||
| * identifier.value = "H0G9379FGK" | ||
| * identifier.use = #official | ||
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| * role = $spor-rms#100000072072 "Active" | ||
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| * status = #active | ||
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| * substance.code.concept.coding = $ginas#H0G9379FGK "Calcium Carbonate" | ||
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| * substance.strength.presentationQuantity = 2500 'mg' | ||
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| * substance.strength.basis = http://terminology.hl7.org/CodeSystem/v3-RoleClass#ACTIB "active ingredient - basis of strength" | ||
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| // Reference to products | ||
| * for = Reference(mid-a64c0ccb066e7fdf6ba2d86dcd8bda5e) | ||
| * for[+] = Reference(mp04c5df8b1b688f62331c672bbd9ffa97) | ||
| * for[+] = Reference(ap-a64c0ccb066e7fdf6ba2d86dcd8bda5e) | ||
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| //* manufacturer.manufacturer = Reference(mah-d21dfe8c15312e8b8bf0b7774b510a9d) | ||
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| Instance: ingredient-for-calchichewd3f-cholecalciferol | ||
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| InstanceOf: IngredientUvEpi | ||
| Title: "Ingredient-active cholecalciferol" | ||
| Description: "cholecalciferol" | ||
| Usage: #inline | ||
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| * identifier.system = $ginas | ||
| * identifier.value = "1C6V77QF41" | ||
| * identifier.use = #official | ||
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| * role = $spor-rms#100000072072 "Active" | ||
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| * status = #active | ||
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| * substance.code.concept.coding = $ginas#1C6V77QF41 "cholecalciferol" | ||
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| * substance.strength.presentationQuantity = 22 'ug' | ||
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| * substance.strength.basis = http://terminology.hl7.org/CodeSystem/v3-RoleClass#ACTIB "active ingredient - basis of strength" | ||
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| // Reference to products | ||
| * for = Reference(mid-a64c0ccb066e7fdf6ba2d86dcd8bda5e) | ||
| * for[+] = Reference(mp04c5df8b1b688f62331c672bbd9ffa97) | ||
| * for[+] = Reference(ap-a64c0ccb066e7fdf6ba2d86dcd8bda5e) | ||
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| //* manufacturer.manufacturer = Reference(mah-d21dfe8c15312e8b8bf0b7774b510a9d) |
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input/fsh/examples/rawEPI/calchichew-d3f-ema-automatic/ManufacturedItemDefinition.fsh
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| Instance: mid-a64c0ccb066e7fdf6ba2d86dcd8bda5e | ||
| InstanceOf: ManufacturedItemDefinitionUvEpi | ||
| Title: "Manufactured item Calcichew-D3 Forte" | ||
| Description: "Manufactured item Calcichew-D3 Forte" | ||
| Usage: #inline | ||
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| * identifier.system = "https://spor.ema.europa.eu/pmswi" | ||
| * identifier.value = "gh-1" | ||
| * identifier.use = #official | ||
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| * status = #active | ||
| * manufacturedDoseForm = https://spor.ema.europa.eu/rmswi/#100000073684 "Chewable tablet" | ||
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| * unitOfPresentation = $spor-rms#200000002152 "Tablet" | ||
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| //* manufacturer = Reference(mah-d21dfe8c15312e8b8bf0b7774b510a9d) |
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