update seamount test

Exec/Seamount/inputs

@@ -4,8 +4,7 @@ stop_time = 30000.0
 
 amrex.fpe_trap_invalid = 1
 
-#fabarray.mfiter_tile_size = 1024 1024 1024
-fabarray.mfiter_tile_size = 16 16 1024
+fabarray.mfiter_tile_size = 1024 1024 1024
 
 # PROBLEM SIZE & GEOMETRY
 # dims come from ROMS ana_grid, and must match vals in prob.cpp right now
@@ -53,16 +52,16 @@ romsx.use_coriolis = true
 romsx.horizontal_advection_scheme = "upstream3" # upstream3 or centered4
 romsx.spatial_order = 2
 
-romsx.coriolis_f0 = -8.26e-5
+romsx.coriolis_f0 = 1.0e-4 #-8.26e-5
 
-romsx.theta_s = 3.0
-romsx.theta_b = 0
-romsx.tcline = 150
+romsx.theta_s = 6.5
+romsx.theta_b = 2.0
+romsx.tcline = 100.
 
 # PROBLEM PARAMETERS (optional)
 romsx.R0    = 1027.0  # background density value (Kg/m3) used in Linear Equation of State
-romsx.S0    = 35.0    # background salinity (nondimensional) constant
-romsx.T0    = 14.0    # background potential temperature (Celsius) constant
+romsx.S0    = 32.0    # background salinity (nondimensional) constant
+romsx.T0    = 10.0    # background potential temperature (Celsius) constant
 romsx.Tcoef = 1.7e-4  # linear equation of state parameter (1/Celcius)
 romsx.Scoef = 0.0     # linear equation of state parameter (nondimensional)
 romsx.rho0  = 1025.0  # Mean density (Kg/m3) used when Boussinesq approx is inferred

Tests/ROMSX_Gold_Files/Seamount/Header

@@ -17,24 +17,9 @@ z_velocity
 6530.6122448979595 6666.666666666667 384.61538461538464 
 0
 0
-0 6 600
+0 1 600
 10
-0 111020.40816326531
-0 160000
--5000 0
-0 111020.40816326531
-160000 320000
--5000 0
-111020.40816326531 215510.20408163266
-0 160000
--5000 0
-111020.40816326531 215510.20408163266
-160000 320000
--5000 0
-215510.20408163266 320000
-0 160000
--5000 0
-215510.20408163266 320000
-160000 320000
+0 320000
+0 320000
 -5000 0
 Level_0/Cell

Tests/ROMSX_Gold_Files/Seamount/Level_0/Cell_H

@@ -2,35 +2,15 @@
 1
 6
 0
-(6 0
-((0,0,0) (16,23,12) (0,0,0))
-((0,24,0) (16,47,12) (0,0,0))
-((17,0,0) (32,23,12) (0,0,0))
-((17,24,0) (32,47,12) (0,0,0))
-((33,0,0) (48,23,12) (0,0,0))
-((33,24,0) (48,47,12) (0,0,0))
+(1 0
+((0,0,0) (48,47,12) (0,0,0))
 )
-6
-FabOnDisk: Cell_D_00002 0
+1
 FabOnDisk: Cell_D_00000 0
-FabOnDisk: Cell_D_00003 0
-FabOnDisk: Cell_D_00000 254682
-FabOnDisk: Cell_D_00001 0
-FabOnDisk: Cell_D_00001 239706
 
-6,6
-1.0091152195473329e+01,0.0000000000000000e+00,3.1999999999999950e+01,-8.0596562274061335e-06,-4.7571516124719847e-06,0.0000000000000000e+00,
-1.0091152195473322e+01,0.0000000000000000e+00,3.1999999999999947e+01,-8.2337553238976310e-06,-7.3240047089317704e-06,0.0000000000000000e+00,
-1.0091152209737174e+01,0.0000000000000000e+00,3.1999999999999943e+01,-1.7154954710763102e-04,-1.6816946567474648e-04,0.0000000000000000e+00,
-1.0091152209737173e+01,0.0000000000000000e+00,3.1999999999999940e+01,-1.7555807622884347e-04,-1.0041814688398989e-04,0.0000000000000000e+00,
-1.0091152195473322e+01,0.0000000000000000e+00,3.1999999999999947e+01,-1.4407271866654339e-05,-3.0824026304662890e-06,0.0000000000000000e+00,
-1.0091152195473329e+01,0.0000000000000000e+00,3.1999999999999947e+01,-1.4375289106788807e-05,-6.1547967524413109e-06,0.0000000000000000e+00,
+1,6
+1.0077862332931520e+01,0.0000000000000000e+00,3.1999999999999950e+01,-1.9486252177584751e-04,-1.8648290131852529e-04,0.0000000000000000e+00,
 
-6,6
-1.7436210557246753e+01,0.0000000000000000e+00,3.2000000000000050e+01,1.4375289102152935e-05,7.8067921994399393e-06,0.0000000000000000e+00,
-1.7436210557231885e+01,0.0000000000000000e+00,3.2000000000000050e+01,1.4407271871353746e-05,4.4587673291830429e-06,0.0000000000000000e+00,
-1.7464062300273408e+01,0.0000000000000000e+00,3.2000000000000057e+01,1.7555807622686217e-04,1.0041814688891416e-04,0.0000000000000000e+00,
-1.7464062300273408e+01,0.0000000000000000e+00,3.2000000000000050e+01,1.7154954711114776e-04,1.6816946567141416e-04,0.0000000000000000e+00,
-1.7434501861032235e+01,0.0000000000000000e+00,3.2000000000000050e+01,8.2337553251508738e-06,5.6784458386967229e-06,0.0000000000000000e+00,
-1.7434501861035898e+01,0.0000000000000000e+00,3.2000000000000050e+01,8.0596562265545909e-06,3.3850743510283830e-06,0.0000000000000000e+00,
+1,6
+1.7475030574920066e+01,0.0000000000000000e+00,3.2000000000000057e+01,1.9486252177614729e-04,1.8648290131693601e-04,0.0000000000000000e+00,
 

Tests/ROMSX_Gold_Files/Seamount/job_info

@@ -3,38 +3,38 @@
 ===============================================================================
 inputs file: inputs
 
-number of MPI processes: 4
+number of MPI processes: 1
 
-CPU time used since start of simulation (CPU-hours): 0.0158847
+CPU time used since start of simulation (CPU-hours): 0.00935854
 
 ===============================================================================
  Plotfile Information
 ===============================================================================
-output data / time: Tue Dec 12 10:35:43 2023
-output dir:         /home/almgren/GitCode/ROMSX/Exec/Seamount
+output data / time: Wed Dec 13 13:48:14 2023
+output dir:         /home/klion/software/ROMSX/Exec/Seamount
 
 
 ===============================================================================
  Build Information
 ===============================================================================
-build date:    2023-12-12 10:31:21.485092
-build machine: Linux manda 5.15.0-76-generic #83~20.04.1-Ubuntu SMP Wed Jun 21 20:23:31 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
-build dir:     /home/almgren/GitCode/ROMSX/Exec/Seamount
-AMReX dir:     /home/almgren/GitCode/amrex
+build date:    2023-12-13 10:58:24.850589
+build machine: Linux varan 5.15.0-79-generic #86~20.04.2-Ubuntu SMP Mon Jul 17 23:27:17 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
+build dir:     /home/klion/software/ROMSX/Exec/Seamount
+AMReX dir:     ../../Submodules/AMReX
 
 COMP:          gnu
 COMP version:  9.4.0
 
 
-ROMSX       git hash: fe8d901-dirty
-AMReX       git hash: 23.12-8-g43d71da32-dirty
+ROMSX       git hash: 80e5cb2-dirty
+AMReX       git hash: 23.09-22-gb2052f2d2
 
 
 ===============================================================================
  Grid Information
 ===============================================================================
  level: 0
-   number of boxes = 6
+   number of boxes = 1
    maximum zones   = 49 48 13 
 
  Boundary conditions
@@ -75,19 +75,16 @@ romsx.plotfile_type = amrex
 romsx.use_coriolis = true
 romsx.horizontal_advection_scheme = upstream3
 romsx.spatial_order = 2
-prob.R0 = 1027.0
-prob.S0 = 32.0
-prob.T0 = 10.0
-prob.rho_0 = 1.0
-prob.T_0 = 1.0
-prob.A_0 = 1.0
-prob.u_0 = 0.0
-prob.v_0 = 0.0
-prob.rad_0 = 0.25
-prob.z0 = 0.1
-prob.zRef = 80.0e-3
-prob.uRef = 8.0e-3
-prob.prob_type = 12
+romsx.coriolis_f0 = 1.0e-4
+romsx.theta_s = 6.5
+romsx.theta_b = 2.0
+romsx.tcline = 100.
+romsx.R0 = 1027.0
+romsx.S0 = 32.0
+romsx.T0 = 10.0
+romsx.Tcoef = 1.7e-4
+romsx.Scoef = 0.0
+romsx.rho0 = 1025.0
 amr.refine_grid_layout_x = 1
 amr.refine_grid_layout_y = 1
 amr.refine_grid_layout_z = 0

Tests/test_files/Seamount/Seamount.i

@@ -52,20 +52,16 @@ romsx.use_coriolis = true
 romsx.horizontal_advection_scheme = "upstream3" # upstream3 or centered4
 romsx.spatial_order = 2
 
-# PROBLEM PARAMETERS (optional)
-prob.R0 = 1027.0
-prob.S0 = 32.0
-prob.T0 = 10.0
+romsx.coriolis_f0 = 1.0e-4 #-8.26e-5
 
-# PROBLEM PARAMETERS (shear)
-prob.rho_0 = 1.0
-prob.T_0   = 1.0
-prob.A_0   = 1.0
-prob.u_0   = 0.0
-prob.v_0   = 0.0
-prob.rad_0 = 0.25
-prob.z0    = 0.1
-prob.zRef  = 80.0e-3
-prob.uRef  = 8.0e-3
+romsx.theta_s = 6.5
+romsx.theta_b = 2.0
+romsx.tcline = 100.
 
-prob.prob_type = 12
+# PROBLEM PARAMETERS (optional)
+romsx.R0    = 1027.0  # background density value (Kg/m3) used in Linear Equation of State
+romsx.S0    = 32.0    # background salinity (nondimensional) constant
+romsx.T0    = 10.0    # background potential temperature (Celsius) constant
+romsx.Tcoef = 1.7e-4  # linear equation of state parameter (1/Celcius)
+romsx.Scoef = 0.0     # linear equation of state parameter (nondimensional)
+romsx.rho0  = 1025.0  # Mean density (Kg/m3) used when Boussinesq approx is inferred