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26 changes: 13 additions & 13 deletions docs/index-qgt.html
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Expand Up @@ -177,53 +177,53 @@ <h1 class="title">Quantitative Genomic Training</h1>

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<p><a href="./post/qgt/2024-06-24-QGT-workbook/index.html"> <p class="card-img-top"><img src="https://raw.githubusercontent.com/hakyimlab/QGT-Columbia-HKI/master/extras/figures/Association-Methods.png" alt="Transcriptome-wide association methods" class="thumbnail-image card-img"/></p> </a></p>
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<h3 class="no-anchor listing-title">
Transcriptome QGT Training 2024
quick training in statistical genetics
</h3>
<div class="listing-subtitle">

</div>
<div class="listing-description">
NEEDS UPDATE
<p>material for introduction to statistical genetics</p>
</div>
</a>
</div>
<div class="metadata">
<a href="./post/qgt/2024-06-24-QGT-workbook/index.html">
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Jun 24, 2024
Jun 25, 2024
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Haky Im
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<p><a href="./post/qgt/2024-06-24-QGT-workbook/index.html"> <p class="card-img-top"><img src="https://raw.githubusercontent.com/hakyimlab/QGT-Columbia-HKI/master/extras/figures/Association-Methods.png" alt="Transcriptome-wide association methods" class="thumbnail-image card-img"/></p> </a></p>
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<a href="./post/qgt/2024-06-24-QGT-workbook/index.html">
<h3 class="no-anchor listing-title">
quick training in statistical genetics
Transcriptome QGT Training 2024
</h3>
<div class="listing-subtitle">

</div>
<div class="listing-description">
<p>material for introduction to statistical genetics</p>
NEEDS UPDATE
</div>
</a>
</div>
<div class="metadata">
<a href="./post/qgt/2024-06-24-QGT-workbook/stat-gen-quick-training.html">
<a href="./post/qgt/2024-06-24-QGT-workbook/index.html">
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Jun 24, 2024
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26 changes: 13 additions & 13 deletions docs/index.html
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Expand Up @@ -171,53 +171,53 @@ <h1 class="title">Hakyimlab Training Material Page</h1>

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<p><a href="./post/qgt/2024-06-24-QGT-workbook/index.html"> <p class="card-img-top"><img src="https://raw.githubusercontent.com/hakyimlab/QGT-Columbia-HKI/master/extras/figures/Association-Methods.png" alt="Transcriptome-wide association methods" class="thumbnail-image card-img"/></p> </a></p>
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<div class="body">
<a href="./post/qgt/2024-06-24-QGT-workbook/index.html">
<a href="./post/qgt/2024-06-24-QGT-workbook/stat-gen-quick-training.html">
<h3 class="no-anchor listing-title">
Transcriptome QGT Training 2024
quick training in statistical genetics
</h3>
<div class="listing-subtitle">

</div>
<div class="listing-description">
NEEDS UPDATE
<p>material for introduction to statistical genetics</p>
</div>
</a>
</div>
<div class="metadata">
<a href="./post/qgt/2024-06-24-QGT-workbook/index.html">
<a href="./post/qgt/2024-06-24-QGT-workbook/stat-gen-quick-training.html">
<div class="listing-date">
Jun 24, 2024
Jun 25, 2024
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<div class="listing-author">
Haky Im
</div>
</a>
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<p><a href="./post/qgt/2024-06-24-QGT-workbook/stat-gen-quick-training.html"> <div class="listing-item-img-placeholder card-img-top" >&nbsp;</div> </a></p>
<p><a href="./post/qgt/2024-06-24-QGT-workbook/index.html"> <p class="card-img-top"><img src="https://raw.githubusercontent.com/hakyimlab/QGT-Columbia-HKI/master/extras/figures/Association-Methods.png" alt="Transcriptome-wide association methods" class="thumbnail-image card-img"/></p> </a></p>
</div>
<div class="body">
<a href="./post/qgt/2024-06-24-QGT-workbook/stat-gen-quick-training.html">
<a href="./post/qgt/2024-06-24-QGT-workbook/index.html">
<h3 class="no-anchor listing-title">
quick training in statistical genetics
Transcriptome QGT Training 2024
</h3>
<div class="listing-subtitle">

</div>
<div class="listing-description">
<p>material for introduction to statistical genetics</p>
NEEDS UPDATE
</div>
</a>
</div>
<div class="metadata">
<a href="./post/qgt/2024-06-24-QGT-workbook/stat-gen-quick-training.html">
<a href="./post/qgt/2024-06-24-QGT-workbook/index.html">
<div class="listing-date">
Jun 24, 2024
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4 changes: 2 additions & 2 deletions docs/listings.json
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41 changes: 24 additions & 17 deletions docs/post/qgt/2024-06-24-QGT-workbook/stat-gen-quick-training.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

<meta name="author" content="Haky Im">
<meta name="dcterms.date" content="2024-06-24">
<meta name="dcterms.date" content="2024-06-25">
<meta name="description" content="material for introduction to statistical genetics">

<title>HKI Courses - quick training in statistical genetics</title>
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<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">June 24, 2024</p>
<p class="date">June 25, 2024</p>
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<div>
<div class="quarto-title-meta-heading">Modified</div>
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<p class="date-modified">June 25, 2024</p>
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</script><div class="modal fade" id="quarto-embedded-source-code-modal" tabindex="-1" aria-labelledby="quarto-embedded-source-code-modal-label" aria-hidden="true"><div class="modal-dialog modal-dialog-scrollable"><div class="modal-content"><div class="modal-header"><h5 class="modal-title" id="quarto-embedded-source-code-modal-label">Source Code</h5><button class="btn-close" data-bs-dismiss="modal"></button></div><div class="modal-body"><div class="">
<div class="sourceCode" id="cb1" data-shortcodes="false"><pre class="sourceCode markdown code-with-copy"><code class="sourceCode markdown"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="co">---</span></span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="an">title:</span><span class="co"> quick training in statistical genetics</span></span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="an">date:</span><span class="co"> 2024-06-24</span></span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="an">date:</span><span class="co"> 2024-06-25</span></span>
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a><span class="an">author:</span><span class="co"> Haky Im</span></span>
<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a><span class="an">description:</span><span class="co"> material for introduction to statistical genetics</span></span>
<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a><span class="co">---</span></span>
<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a>I taught today the QGT course organized by Iuliana at Columbia for the 5th time. Participants asked for material for a quick training material in statistical genomics. It's hard to choose one topic over the other one. So here is a biased selection of material that may help.</span>
<span id="cb1-9"><a href="#cb1-9" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a><span class="an">date-modified:</span><span class="co"> last-modified</span></span>
<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a><span class="co">---</span></span>
<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-9"><a href="#cb1-9" aria-hidden="true" tabindex="-1"></a>I taught today the QGT course organized by Iuliana at Columbia for the 5th time. Participants asked for material for a quick training material in statistical genomics. It's hard to choose one topic over the other one. So here is a biased selection of material that may help.</span>
<span id="cb1-10"><a href="#cb1-10" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-11"><a href="#cb1-11" aria-hidden="true" tabindex="-1"></a><span class="ss">1. </span>Read "a brief history of human disease genetics" (nicely written summary of the development in the last two decades) https://www.nature.com/articles/s41586-019-1879-7 </span>
<span id="cb1-12"><a href="#cb1-12" aria-hidden="true" tabindex="-1"></a><span class="ss">2. </span>Read GTExs flagship paper and very thorough supplementary material https://science.sciencemag.org/content/369/6509/1318</span>
<span id="cb1-13"><a href="#cb1-13" aria-hidden="true" tabindex="-1"></a><span class="ss"> - </span>also read the GTEx working group's paper for suggested practices to apply GTEx resources to GWAS https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02252-4</span>
<span id="cb1-14"><a href="#cb1-14" aria-hidden="true" tabindex="-1"></a><span class="ss">3. </span>Read the ENCODE paper https://www.nature.com/articles/s41586-020-2493-4</span>
<span id="cb1-15"><a href="#cb1-15" aria-hidden="true" tabindex="-1"></a><span class="ss">4. </span>GWAS tutorial Marees et al (https://course-material.hakyimlab.org/post/bios-25328/2024-04-05-lab-03/)</span>
<span id="cb1-16"><a href="#cb1-16" aria-hidden="true" tabindex="-1"></a><span class="ss">5. </span></span>
<span id="cb1-17"><a href="#cb1-17" aria-hidden="true" tabindex="-1"></a><span class="ss">6. </span>https://course-material.hakyimlab.org/index-bios-25328 This is my portion of the cancer genetics and genomics course where I teach an lightweight intro to statistical genetics</span>
<span id="cb1-18"><a href="#cb1-18" aria-hidden="true" tabindex="-1"></a><span class="ss">7. </span>Genetic and molecular architecture of complex traits https://doi.org/10.1016/j.cell.2024.01.023</span>
<span id="cb1-19"><a href="#cb1-19" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-20"><a href="#cb1-20" aria-hidden="true" tabindex="-1"></a></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<span id="cb1-11"><a href="#cb1-11" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-12"><a href="#cb1-12" aria-hidden="true" tabindex="-1"></a><span class="ss">1. </span>Read "a brief history of human disease genetics" (nicely written summary of the development in the last two decades) https://www.nature.com/articles/s41586-019-1879-7 </span>
<span id="cb1-13"><a href="#cb1-13" aria-hidden="true" tabindex="-1"></a><span class="ss">2. </span>Read GTExs flagship paper and very thorough supplementary material https://science.sciencemag.org/content/369/6509/1318</span>
<span id="cb1-14"><a href="#cb1-14" aria-hidden="true" tabindex="-1"></a><span class="ss"> - </span>also read the GTEx working group's paper for suggested practices to apply GTEx resources to GWAS https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02252-4</span>
<span id="cb1-15"><a href="#cb1-15" aria-hidden="true" tabindex="-1"></a><span class="ss">3. </span>Read the ENCODE paper https://www.nature.com/articles/s41586-020-2493-4</span>
<span id="cb1-16"><a href="#cb1-16" aria-hidden="true" tabindex="-1"></a><span class="ss">4. </span>GWAS tutorial Marees et al (https://course-material.hakyimlab.org/post/bios-25328/2024-04-05-lab-03/)</span>
<span id="cb1-17"><a href="#cb1-17" aria-hidden="true" tabindex="-1"></a><span class="ss">5. </span></span>
<span id="cb1-18"><a href="#cb1-18" aria-hidden="true" tabindex="-1"></a><span class="ss">6. </span>https://course-material.hakyimlab.org/index-bios-25328 This is my portion of the cancer genetics and genomics course where I teach an lightweight intro to statistical genetics</span>
<span id="cb1-19"><a href="#cb1-19" aria-hidden="true" tabindex="-1"></a><span class="ss">7. </span>Genetic and molecular architecture of complex traits https://doi.org/10.1016/j.cell.2024.01.023</span>
<span id="cb1-20"><a href="#cb1-20" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-21"><a href="#cb1-21" aria-hidden="true" tabindex="-1"></a></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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