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Deployed e19bbfd with MkDocs version: 1.5.3
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198 changes: 198 additions & 0 deletions assets/configs/config_GGIR_counts.csv
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"argument","value","context"
"config_file_in_outputdir","","not applicable"
"datadir","c()","not applicable"
"do.report","c(2,4,5)","not applicable"
"f0","1","not applicable"
"f1","6","not applicable"
"mode","c(1,2,3,4,5)","not applicable"
"outputdir","","not applicable"
"studyname","c()","not applicable"
"GGIRread_version","0.3.0","not applicable"
"GGIRversion","2.10.3","not applicable"
"R_version","R version 4.3.1 (2023-06-16 ucrt)","not applicable"
"qwindow","c(0,24)","params_247"
"qlevels","c()","params_247"
"qwindow_dateformat","%d-%m-%Y","params_247"
"ilevels","c()","params_247"
"IVIS_windowsize_minutes","60","params_247"
"IVIS_epochsize_seconds","c()","params_247"
"IVIS.activity.metric","2","params_247"
"IVIS_acc_threshold","20","params_247"
"qM5L5","c()","params_247"
"MX.ig.min.dur","10","params_247"
"M5L5res","10","params_247"
"winhr","5","params_247"
"iglevels","c()","params_247"
"LUXthresholds","c(0,100,500,1000,3000,5000,10000)","params_247"
"LUX_cal_constant","c()","params_247"
"LUX_cal_exponent","c()","params_247"
"LUX_day_segments","c()","params_247"
"L5M5window","c(0,24)","params_247"
"cosinor","FALSE","params_247"
"includedaycrit","10","params_cleaning"
"ndayswindow","7","params_cleaning"
"strategy","1","params_cleaning"
"maxdur","0","params_cleaning"
"hrs.del.start","0","params_cleaning"
"hrs.del.end","0","params_cleaning"
"includedaycrit.part5","0.666666667","params_cleaning"
"excludefirstlast.part5","FALSE","params_cleaning"
"TimeSegments2ZeroFile","c()","params_cleaning"
"do.imp","FALSE","params_cleaning"
"data_cleaning_file","c()","params_cleaning"
"minimum_MM_length.part5","23","params_cleaning"
"excludefirstlast","FALSE","params_cleaning"
"includenightcrit","10","params_cleaning"
"excludefirst.part4","FALSE","params_cleaning"
"excludelast.part4","FALSE","params_cleaning"
"max_calendar_days","0","params_cleaning"
"nonWearEdgeCorrection","TRUE","params_cleaning"
"nonwear_approach","2013","params_cleaning"
"segmentWEARcrit.part5","0.5","params_cleaning"
"segmentDAYSPTcrit.part5","c(0,0)","params_cleaning"
"overwrite","TRUE","params_general"
"acc.metric","NeishabouriCount_x","params_general"
"maxNcores","c()","params_general"
"print.filename","FALSE","params_general"
"do.parallel","TRUE","params_general"
"windowsizes","c(15,900,3600)","params_general"
"desiredtz","","params_general"
"configtz","","params_general"
"idloc","6","params_general"
"dayborder","0","params_general"
"part5_agg2_60seconds","FALSE","params_general"
"sensor.location","wrist","params_general"
"expand_tail_max_hours","c()","params_general"
"recordingEndSleepHour","c()","params_general"
"dataFormat","actigraph_csv","params_general"
"maxRecordingInterval","c()","params_general"
"extEpochData_timeformat","%m/%d/%Y %H:%M:%S","params_general"
"do.anglex","FALSE","params_metrics"
"do.angley","FALSE","params_metrics"
"do.anglez","TRUE","params_metrics"
"do.zcx","FALSE","params_metrics"
"do.zcy","FALSE","params_metrics"
"do.zcz","FALSE","params_metrics"
"do.enmo","FALSE","params_metrics"
"do.lfenmo","FALSE","params_metrics"
"do.en","FALSE","params_metrics"
"do.mad","FALSE","params_metrics"
"do.enmoa","FALSE","params_metrics"
"do.roll_med_acc_x","FALSE","params_metrics"
"do.roll_med_acc_y","FALSE","params_metrics"
"do.roll_med_acc_z","FALSE","params_metrics"
"do.dev_roll_med_acc_x","FALSE","params_metrics"
"do.dev_roll_med_acc_y","FALSE","params_metrics"
"do.dev_roll_med_acc_z","FALSE","params_metrics"
"do.bfen","FALSE","params_metrics"
"do.hfen","FALSE","params_metrics"
"do.hfenplus","FALSE","params_metrics"
"do.lfen","FALSE","params_metrics"
"do.lfx","FALSE","params_metrics"
"do.lfy","FALSE","params_metrics"
"do.lfz","FALSE","params_metrics"
"do.hfx","FALSE","params_metrics"
"do.hfy","FALSE","params_metrics"
"do.hfz","FALSE","params_metrics"
"do.bfx","FALSE","params_metrics"
"do.bfy","FALSE","params_metrics"
"do.bfz","FALSE","params_metrics"
"do.brondcounts","FALSE","params_metrics"
"do.neishabouricounts","TRUE","params_metrics"
"hb","15","params_metrics"
"lb","0.2","params_metrics"
"n","4","params_metrics"
"zc.lb","0.25","params_metrics"
"zc.hb","3","params_metrics"
"zc.sb","0.01","params_metrics"
"zc.order","2","params_metrics"
"zc.scale","1","params_metrics"
"actilife_LFE","FALSE","params_metrics"
"epochvalues2csv","FALSE","params_output"
"save_ms5rawlevels","TRUE","params_output"
"save_ms5raw_format","csv","params_output"
"save_ms5raw_without_invalid","FALSE","params_output"
"storefolderstructure","FALSE","params_output"
"timewindow","c(MM,WW)","params_output"
"viewingwindow","1","params_output"
"dofirstpage","TRUE","params_output"
"visualreport","FALSE","params_output"
"week_weekend_aggregate.part5","FALSE","params_output"
"do.part3.pdf","TRUE","params_output"
"outliers.only","FALSE","params_output"
"criterror","3","params_output"
"do.visual","TRUE","params_output"
"do.sibreport","FALSE","params_output"
"do.part2.pdf","TRUE","params_output"
"sep_reports",",","params_output"
"sep_config",",","params_output"
"visualreport_without_invalid","TRUE","params_output"
"mvpathreshold","100","params_phyact"
"boutcriter","0.8","params_phyact"
"mvpadur","c(1,5,10)","params_phyact"
"boutcriter.in","0.9","params_phyact"
"boutcriter.lig","0.8","params_phyact"
"boutcriter.mvpa","0.8","params_phyact"
"threshold.lig","40.6","params_phyact"
"threshold.mod","208.33","params_phyact"
"threshold.vig","833.33","params_phyact"
"boutdur.mvpa","c(1,5,10)","params_phyact"
"boutdur.in","c(10,20,30)","params_phyact"
"boutdur.lig","c(1,5,10)","params_phyact"
"frag.metrics","c()","params_phyact"
"chunksize","1","params_rawdata"
"spherecrit","0.3","params_rawdata"
"minloadcrit","72","params_rawdata"
"printsummary","FALSE","params_rawdata"
"do.cal","TRUE","params_rawdata"
"backup.cal.coef","retrieve","params_rawdata"
"dynrange","c()","params_rawdata"
"minimumFileSizeMB","2","params_rawdata"
"rmc.dec",".","params_rawdata"
"rmc.firstrow.acc","c()","params_rawdata"
"rmc.firstrow.header","c()","params_rawdata"
"rmc.header.length","c()","params_rawdata"
"rmc.col.acc","c(1,2,3)","params_rawdata"
"rmc.col.temp","c()","params_rawdata"
"rmc.col.time","c()","params_rawdata"
"rmc.unit.acc","g","params_rawdata"
"rmc.unit.temp","C","params_rawdata"
"rmc.unit.time","POSIX","params_rawdata"
"rmc.format.time","%Y-%m-%d %H:%M:%OS","params_rawdata"
"rmc.bitrate","c()","params_rawdata"
"rmc.dynamic_range","c()","params_rawdata"
"rmc.unsignedbit","TRUE","params_rawdata"
"rmc.origin","01/01/1970","params_rawdata"
"rmc.desiredtz","c()","params_rawdata"
"rmc.configtz","c()","params_rawdata"
"rmc.sf","c()","params_rawdata"
"rmc.headername.sf","c()","params_rawdata"
"rmc.headername.sn","c()","params_rawdata"
"rmc.headername.recordingid","c()","params_rawdata"
"rmc.header.structure","c()","params_rawdata"
"rmc.check4timegaps","FALSE","params_rawdata"
"rmc.noise","13","params_rawdata"
"rmc.col.wear","c()","params_rawdata"
"rmc.doresample","FALSE","params_rawdata"
"interpolationType","1","params_rawdata"
"imputeTimegaps","TRUE","params_rawdata"
"frequency_tol","0.1","params_rawdata"
"anglethreshold","5","params_sleep"
"timethreshold","5","params_sleep"
"ignorenonwear","FALSE","params_sleep"
"constrain2range","TRUE","params_sleep"
"HASPT.algo","NotWorn","params_sleep"
"HASIB.algo","NotWorn","params_sleep"
"Sadeh_axis","","params_sleep"
"longitudinal_axis","c()","params_sleep"
"HASPT.ignore.invalid","FALSE","params_sleep"
"loglocation","c()","params_sleep"
"colid","1","params_sleep"
"coln1","2","params_sleep"
"nnights","c()","params_sleep"
"relyonguider","FALSE","params_sleep"
"def.noc.sleep","1","params_sleep"
"sleeplogsep","c()","params_sleep"
"sleepwindowType","SPT","params_sleep"
"possible_nap_window","c(9,18)","params_sleep"
"possible_nap_dur","c(15,240)","params_sleep"
185 changes: 185 additions & 0 deletions assets/configs/config_GGIR_raw.csv
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argument,value,context
datadir,c(),not applicable
do.report,"c(2,4,5)",not applicable
f0,1,not applicable
f1,1,not applicable
mode,"c(1,2,3,4,5)",not applicable
outputdir,./,not applicable
studyname,c(),not applicable
GGIRread_version,0.2.6,not applicable
GGIRversion,2.9.0,not applicable
R_version,R version 4.2.2 (2022-10-31 ucrt),not applicable
qwindow,"c(0,24)",params_247
qlevels,c(),params_247
qwindow_dateformat,%d-%m-%Y,params_247
ilevels,c(),params_247
IVIS_windowsize_minutes,60,params_247
IVIS_epochsize_seconds,c(),params_247
IVIS.activity.metric,2,params_247
IVIS_acc_threshold,20,params_247
qM5L5,c(),params_247
MX.ig.min.dur,10,params_247
M5L5res,10,params_247
winhr,5,params_247
iglevels,c(),params_247
LUXthresholds,"c(0,100,500,1000,3000,5000,10000)",params_247
LUX_cal_constant,c(),params_247
LUX_cal_exponent,c(),params_247
LUX_day_segments,c(),params_247
L5M5window,"c(0,24)",params_247
cosinor,FALSE,params_247
includedaycrit,16,params_cleaning
ndayswindow,7,params_cleaning
strategy,1,params_cleaning
maxdur,0,params_cleaning
hrs.del.start,0,params_cleaning
hrs.del.end,0,params_cleaning
includedaycrit.part5,0.666666667,params_cleaning
excludefirstlast.part5,FALSE,params_cleaning
TimeSegments2ZeroFile,c(),params_cleaning
do.imp,TRUE,params_cleaning
data_cleaning_file,c(),params_cleaning
minimum_MM_length.part5,23,params_cleaning
excludefirstlast,FALSE,params_cleaning
includenightcrit,16,params_cleaning
excludefirst.part4,FALSE,params_cleaning
excludelast.part4,FALSE,params_cleaning
max_calendar_days,0,params_cleaning
nonWearEdgeCorrection,TRUE,params_cleaning
overwrite,FALSE,params_general
acc.metric,ENMO,params_general
maxNcores,c(),params_general
print.filename,FALSE,params_general
do.parallel,TRUE,params_general
windowsizes,"c(5,900,3600)",params_general
desiredtz,,params_general
configtz,,params_general
idloc,3,params_general
dayborder,0,params_general
part5_agg2_60seconds,FALSE,params_general
sensor.location,wrist,params_general
expand_tail_max_hours,c(),params_general
recordingEndSleepHour,c(),params_general
do.anglex,FALSE,params_metrics
do.angley,FALSE,params_metrics
do.anglez,TRUE,params_metrics
do.zcx,FALSE,params_metrics
do.zcy,FALSE,params_metrics
do.zcz,FALSE,params_metrics
do.enmo,TRUE,params_metrics
do.lfenmo,FALSE,params_metrics
do.en,FALSE,params_metrics
do.mad,FALSE,params_metrics
do.enmoa,FALSE,params_metrics
do.roll_med_acc_x,FALSE,params_metrics
do.roll_med_acc_y,FALSE,params_metrics
do.roll_med_acc_z,FALSE,params_metrics
do.dev_roll_med_acc_x,FALSE,params_metrics
do.dev_roll_med_acc_y,FALSE,params_metrics
do.dev_roll_med_acc_z,FALSE,params_metrics
do.bfen,FALSE,params_metrics
do.hfen,FALSE,params_metrics
do.hfenplus,FALSE,params_metrics
do.lfen,FALSE,params_metrics
do.lfx,FALSE,params_metrics
do.lfy,FALSE,params_metrics
do.lfz,FALSE,params_metrics
do.hfx,FALSE,params_metrics
do.hfy,FALSE,params_metrics
do.hfz,FALSE,params_metrics
do.bfx,FALSE,params_metrics
do.bfy,FALSE,params_metrics
do.bfz,FALSE,params_metrics
do.brondcounts,FALSE,params_metrics
do.neishabouricounts,FALSE,params_metrics
hb,15,params_metrics
lb,0.2,params_metrics
n,4,params_metrics
zc.lb,0.25,params_metrics
zc.hb,3,params_metrics
zc.sb,0.01,params_metrics
zc.order,2,params_metrics
zc.scale,1,params_metrics
actilife_LFE,FALSE,params_metrics
epochvalues2csv,FALSE,params_output
save_ms5rawlevels,FALSE,params_output
save_ms5raw_format,csv,params_output
save_ms5raw_without_invalid,TRUE,params_output
storefolderstructure,FALSE,params_output
timewindow,"c(MM,WW)",params_output
viewingwindow,1,params_output
dofirstpage,TRUE,params_output
visualreport,TRUE,params_output
week_weekend_aggregate.part5,FALSE,params_output
do.part3.pdf,TRUE,params_output
outliers.only,FALSE,params_output
criterror,3,params_output
do.visual,TRUE,params_output
do.sibreport,FALSE,params_output
do.part2.pdf,TRUE,params_output
mvpathreshold,100,params_phyact
boutcriter,0.8,params_phyact
mvpadur,"c(1,5,10)",params_phyact
boutcriter.in,0.9,params_phyact
boutcriter.lig,0.8,params_phyact
boutcriter.mvpa,0.8,params_phyact
threshold.lig,40,params_phyact
threshold.mod,100,params_phyact
threshold.vig,400,params_phyact
boutdur.mvpa,"c(1,5,10)",params_phyact
boutdur.in,"c(10,20,30)",params_phyact
boutdur.lig,"c(1,5,10)",params_phyact
frag.metrics,c(),params_phyact
chunksize,1,params_rawdata
spherecrit,0.3,params_rawdata
minloadcrit,72,params_rawdata
printsummary,FALSE,params_rawdata
do.cal,TRUE,params_rawdata
backup.cal.coef,retrieve,params_rawdata
dynrange,c(),params_rawdata
minimumFileSizeMB,2,params_rawdata
rmc.dec,.,params_rawdata
rmc.firstrow.acc,c(),params_rawdata
rmc.firstrow.header,c(),params_rawdata
rmc.header.length,c(),params_rawdata
rmc.col.acc,"c(1,2,3)",params_rawdata
rmc.col.temp,c(),params_rawdata
rmc.col.time,c(),params_rawdata
rmc.unit.acc,g,params_rawdata
rmc.unit.temp,C,params_rawdata
rmc.unit.time,POSIX,params_rawdata
rmc.format.time,%Y-%m-%d %H:%M:%OS,params_rawdata
rmc.bitrate,c(),params_rawdata
rmc.dynamic_range,c(),params_rawdata
rmc.unsignedbit,TRUE,params_rawdata
rmc.origin,01/01/1970,params_rawdata
rmc.desiredtz,,params_rawdata
rmc.configtz,c(),params_rawdata
rmc.sf,c(),params_rawdata
rmc.headername.sf,c(),params_rawdata
rmc.headername.sn,c(),params_rawdata
rmc.headername.recordingid,c(),params_rawdata
rmc.header.structure,c(),params_rawdata
rmc.check4timegaps,FALSE,params_rawdata
rmc.noise,13,params_rawdata
rmc.col.wear,c(),params_rawdata
rmc.doresample,FALSE,params_rawdata
interpolationType,1,params_rawdata
imputeTimegaps,TRUE,params_rawdata
anglethreshold,5,params_sleep
timethreshold,5,params_sleep
ignorenonwear,TRUE,params_sleep
constrain2range,TRUE,params_sleep
HASPT.algo,HDCZA,params_sleep
HASIB.algo,vanHees2015,params_sleep
Sadeh_axis,,params_sleep
longitudinal_axis,c(),params_sleep
HASPT.ignore.invalid,FALSE,params_sleep
loglocation,c(),params_sleep
colid,1,params_sleep
coln1,2,params_sleep
nnights,c(),params_sleep
relyonguider,FALSE,params_sleep
def.noc.sleep,1,params_sleep
sleeplogsep,",",params_sleep
sleepwindowType,SPT,params_sleep
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