3.1.1
This is a bugfix release. It fixes the following problem(s):
- The
--exclude-NAs
flag was not being passed along correctly to the main pipeline and didn’t have any effect on downstream filtering. - The aggregate report creation step had some inefficiencies which caused its runtime to be much longer than necessary.
- An unneeded import statement for the PyVCF package had the potential to cause errors while running the pVACseq pipeline.