Upgrade to version 1.3.4

griffithlab · Mar 28, 2019 · c5188da · c5188da
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commit c5188da
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Showing 4 changed files with 20 additions and 12 deletions.
diff --git a/docs/conf.py b/docs/conf.py
@@ -69,7 +69,7 @@
 # The short X.Y version.
 version = '1.3'
 # The full version, including alpha/beta/rc tags.
-release = '1.3.3'
+release = '1.3.4'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/docs/index.rst b/docs/index.rst
@@ -47,16 +47,12 @@ New in version |release|
 
 This version is a hotfix release. It fixes the following issues:
 
-- We were previously using our own locking logic while multithreading which
-  contained a bug that could result in runs getting stuck waiting on a lock.
-  This release switches to using the locking implementation provided by the
-  ``pymp-pypi`` multithreading package.
-- In an attempt to reduce cluttered output generated by Tenserflow we were
-  previously repressing any message generated during the import of MHCflurry and
-  MHCnuggets. As a side effect, this would also supress any legitimate error messages
-  generated during these imports which would result in the ``pvacseq``,
-  ``pvacfuse``, and ``pvacvector`` commands exiting without output. This
-  release updates to code so that actual errors still get output.
+- We were previously using nested multi-threading which would cause defunct
+  child jobs and stalled runs. Switching to single-level multi-threading fixes
+  this issue.
+- When running pVACvector from a pVACseq result file the creation of the
+  peptide fasta file might cause an error if the epitope was situated near the
+  beginning of the transcript. This issue has been fixed.
 
 Past release notes can be found on our :ref:`releases` page.
 

diff --git a/docs/releases/1_3.rst b/docs/releases/1_3.rst
@@ -71,3 +71,15 @@ This version is a hotfix release. It fixes the following issues:
   generated during these imports which would result in the ``pvacseq``,
   ``pvacfuse``, and ``pvacvector`` commands exiting without output. This
   release updates to code so that actual errors still get output.
+
+1.3.4
+-----
+
+This version is a hotfix release. It fixes the following issues:
+
+- We were previously using nested multi-threading which would cause defunct
+  child jobs and stalled runs. Switching to single-level multi-threading fixes
+  this issue.
+- When running pVACvector from a pVACseq result file the creation of the
+  peptide fasta file might cause an error if the epitope was situated near the
+  beginning of the transcript. This issue has been fixed.
diff --git a/setup.py b/setup.py
@@ -56,7 +56,7 @@
 
 setup(
     name="pvactools",
-    version="1.3.3",
+    version="1.3.4",
     packages=[
         "tools",
         "tools.pvacfuse",