Revert "Remove argument that is no longer supported"

This reverts commit 726f1d1.
griffithlab · Apr 23, 2019 · 44380c3 · 44380c3
1 parent 726f1d1
commit 44380c3
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/lib/run_argument_parser.py b/lib/run_argument_parser.py
@@ -146,6 +146,11 @@ def __init__(self):
         )
         PredictionRunArgumentParser.__init__(self, tool_name, input_file_help)
 
+        self.parser.add_argument(
+            "-i", "--additional-input-file-list",
+            help="yaml file of additional files to be used as inputs, e.g. cufflinks output files. "
+                 + "For an example of this yaml file run `pvacseq config_files additional_input_file_list`."
+        )
         self.parser.add_argument(
             "-p", "--phased-proximal-variants-vcf",
             help="A VCF with phased proximal variant information."