Merge branch 'main' of github.com:gridap/GridapSolvers.jl into joss-p…

…aper

Project.toml

@@ -1,7 +1,7 @@
 name = "GridapSolvers"
 uuid = "6d3209ee-5e3c-4db7-a716-942eb12ed534"
 authors = ["Santiago Badia <[email protected]>", "Jordi Manyer <[email protected]>", "Alberto F. Martin <[email protected]>", "Javier Principe <[email protected]>"]
-version = "0.3.0"
+version = "0.4.0"
 
 [deps]
 AbstractTrees = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
@@ -30,7 +30,9 @@ GridapDistributed = "0.4"
 GridapP4est = "0.3"
 GridapPETSc = "0.5"
 IterativeSolvers = "0.9"
+LineSearches = "7.0.1"
 MPI = "0.20"
+NLsolve = "4.3.0"
 PartitionedArrays = "0.3"
 SparseMatricesCSR = "0.6.7"
 julia = "1.7"

README.md

@@ -4,6 +4,7 @@
 [![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://gridap.github.io/GridapSolvers.jl/dev/)
 [![Build Status](https://github.com/gridap/GridapSolvers.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/gridap/GridapSolvers.jl/actions/workflows/CI.yml?query=branch%3Amain)
 [![Coverage](https://codecov.io/gh/gridap/GridapSolvers.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/gridap/GridapSolvers.jl)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.13327414.svg)](https://zenodo.org/records/13327414)
 
 GridapSolvers provides algebraic and non-algebraic solvers for the Gridap ecosystem, designed with High Performance Computing (HPC) in mind.
 

docs/.gitignore

@@ -1,3 +1,4 @@
 Manifest.toml
 build/
-site/
+site/
+src/Examples/

docs/Manifest.toml

@@ -121,9 +121,9 @@ version = "1.4.0"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "b8fe8546d52ca154ac556809e10c75e6e7430ac8"
+git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.5"
+version = "0.7.6"
 
 [[deps.Combinatorics]]
 git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860"
@@ -138,9 +138,9 @@ version = "0.3.0"
 
 [[deps.Compat]]
 deps = ["TOML", "UUIDs"]
-git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248"
+git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "4.15.0"
+version = "4.16.0"
 weakdeps = ["Dates", "LinearAlgebra"]
 
     [deps.Compat.extensions]
@@ -153,9 +153,9 @@ version = "1.0.5+0"
 
 [[deps.ConstructionBase]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2"
+git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98"
 uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
-version = "1.5.5"
+version = "1.5.6"
 
     [deps.ConstructionBase.extensions]
     ConstructionBaseIntervalSetsExt = "IntervalSets"
@@ -213,9 +213,9 @@ version = "0.9.3"
 
 [[deps.Documenter]]
 deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "CodecZlib", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "TOML", "Test", "Unicode"]
-git-tree-sha1 = "4a40af50e8b24333b9ec6892546d9ca5724228eb"
+git-tree-sha1 = "76deb8c15f37a3853f13ea2226b8f2577652de05"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-version = "1.3.0"
+version = "1.5.0"
 
 [[deps.Downloads]]
 deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
@@ -315,15 +315,15 @@ version = "2.44.0+2"
 
 [[deps.Gridap]]
 deps = ["AbstractTrees", "BSON", "BlockArrays", "Combinatorics", "DataStructures", "DocStringExtensions", "FastGaussQuadrature", "FileIO", "FillArrays", "ForwardDiff", "JLD2", "JSON", "LineSearches", "LinearAlgebra", "NLsolve", "NearestNeighbors", "PolynomialBases", "Preferences", "QuadGK", "Random", "SparseArrays", "SparseMatricesCSR", "StaticArrays", "Statistics", "Test", "WriteVTK"]
-git-tree-sha1 = "195d7227ea45e1e62d5646bfedc36347f77775b8"
+git-tree-sha1 = "8c735f66c5fa081c3ea32a803df434c8790e1a47"
 uuid = "56d4f2e9-7ea1-5844-9cf6-b9c51ca7ce8e"
-version = "0.18.3"
+version = "0.18.4"
 
 [[deps.GridapDistributed]]
 deps = ["BlockArrays", "FillArrays", "Gridap", "LinearAlgebra", "MPI", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR", "WriteVTK"]
-git-tree-sha1 = "ef19c15ddbad230b5b40e32ae7f560396be8f75c"
+git-tree-sha1 = "72b7eb03a098c79860f8676bf3959449285516f5"
 uuid = "f9701e48-63b3-45aa-9a63-9bc6c271f355"
-version = "0.4.2"
+version = "0.4.4"
 
 [[deps.GridapP4est]]
 deps = ["ArgParse", "FillArrays", "Gridap", "GridapDistributed", "Libdl", "MPI", "P4est_wrapper", "PartitionedArrays", "Test"]
@@ -377,10 +377,10 @@ uuid = "42fd0dbc-a981-5370-80f2-aaf504508153"
 version = "0.9.4"
 
 [[deps.JLD2]]
-deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"]
-git-tree-sha1 = "5fe858cb863e211c6dedc8cce2dc0752d4ab6e2b"
+deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"]
+git-tree-sha1 = "67d4690d32c22e28818a434b293a374cc78473d3"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.50"
+version = "0.4.51"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -439,9 +439,9 @@ version = "0.9.1"
 
 [[deps.LineSearches]]
 deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"]
-git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d"
+git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1"
 uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255"
-version = "7.2.0"
+version = "7.3.0"
 
 [[deps.LinearAlgebra]]
 deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
@@ -599,9 +599,9 @@ version = "0.8.1+0"
 
 [[deps.OpenMPI_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"]
-git-tree-sha1 = "a9de2f1fc98b92f8856c640bf4aec1ac9b2a0d86"
+git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f"
 uuid = "fe0851c0-eecd-5654-98d4-656369965a5c"
-version = "5.0.3+0"
+version = "5.0.5+0"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -674,9 +674,9 @@ version = "0.3.3"
 
 [[deps.PolynomialBases]]
 deps = ["ArgCheck", "AutoHashEquals", "FFTW", "FastGaussQuadrature", "LinearAlgebra", "Requires", "SimpleUnPack", "SpecialFunctions"]
-git-tree-sha1 = "aa1877430a7e8b0c7a35ea095c415d462af0870f"
+git-tree-sha1 = "b62fd0464edfffce54393cd617135af30fa47006"
 uuid = "c74db56a-226d-5e98-8bb0-a6049094aeea"
-version = "0.4.21"
+version = "0.4.22"
 
 [[deps.PrecompileTools]]
 deps = ["Preferences"]
@@ -696,9 +696,9 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
 [[deps.QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
-git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e"
+git-tree-sha1 = "e237232771fdafbae3db5c31275303e056afaa9f"
 uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
-version = "2.9.4"
+version = "2.10.1"
 
 [[deps.REPL]]
 deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
@@ -833,13 +833,9 @@ uuid = "b718987f-49a8-5099-9789-dcd902bef87d"
 version = "1.0.2"
 
 [[deps.TranscodingStreams]]
-git-tree-sha1 = "60df3f8126263c0d6b357b9a1017bb94f53e3582"
+git-tree-sha1 = "e84b3a11b9bece70d14cce63406bbc79ed3464d2"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.11.0"
-weakdeps = ["Random", "Test"]
-
-    [deps.TranscodingStreams.extensions]
-    TestExt = ["Test", "Random"]
+version = "0.11.2"
 
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]

docs/make.jl

@@ -32,6 +32,7 @@ makedocs(;
             "Darcy (GMG)" => "Examples/DarcyGMG.md",
         ],
     ],
+    warnonly=[:doctest,:example_block,:eval_block]
 )
 
 deploydocs(;