minor changes for JOSS publication #400
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: ['*'] | |
| pull_request: | |
| concurrency: | |
| # Skip intermediate builds: always. | |
| # Cancel intermediate builds: only if it is a pull request build. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} | |
| jobs: | |
| test: | |
| name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| P4EST_ROOT_DIR: "/opt/p4est/2.8.5/" | |
| JULIA_PETSC_LIBRARY: "/opt/petsc/3.18/lib/libpetsc" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: | |
| - '1.9' | |
| os: | |
| - ubuntu-latest | |
| arch: | |
| - x64 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache p4est | |
| id: cache-p4est | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{env.P4EST_ROOT_DIR}} | |
| key: ${{ runner.os }}-build-${{ env.P4EST_ROOT_DIR }}- | |
| restore-keys: | | |
| ${{ runner.os }}-build-${{ env.P4EST_ROOT_DIR }}- | |
| ${{ runner.os }}-build- | |
| ${{ runner.os }}- | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.version }} | |
| arch: ${{ matrix.arch }} | |
| - name: Install p4est/petsc dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y wget gfortran g++ openmpi-bin libopenmpi-dev | |
| - name: Install p4est | |
| if: steps.cache-p4est.outputs.cache-hit != 'true' | |
| run: | | |
| # Install p4est 2.8.5 from sources | |
| CURR_DIR=$(pwd) | |
| PACKAGE=p4est | |
| VERSION=2.8.5 | |
| INSTALL_ROOT=/opt | |
| P4EST_INSTALL=$INSTALL_ROOT/$PACKAGE/$VERSION | |
| TAR_FILE=$PACKAGE-$VERSION.tar.gz | |
| URL="https://github.com/p4est/p4est.github.io/raw/master/release" | |
| ROOT_DIR=/tmp | |
| SOURCES_DIR=$ROOT_DIR/$PACKAGE-$VERSION | |
| BUILD_DIR=$SOURCES_DIR/build | |
| wget -q $URL/$TAR_FILE -O $ROOT_DIR/$TAR_FILE | |
| mkdir -p $SOURCES_DIR | |
| tar xzf $ROOT_DIR/$TAR_FILE -C $SOURCES_DIR --strip-components=1 | |
| cd $SOURCES_DIR | |
| ./configure --prefix=$P4EST_INSTALL --without-blas --without-lapack --enable-mpi -disable-dependency-tracking | |
| make --quiet | |
| make --quiet install | |
| rm -rf $ROOT_DIR/$TAR_FILE $SOURCES_DIR | |
| cd $CURR_DIR | |
| - name: Install petsc | |
| ##if: steps.cache-petsc.outputs.cache-hit != 'true' | |
| run: | | |
| CURR_DIR=$(pwd) | |
| PACKAGE=petsc | |
| VERSION=3.18 | |
| INSTALL_ROOT=/opt | |
| PETSC_INSTALL=$INSTALL_ROOT/$PACKAGE/$VERSION | |
| TAR_FILE=$PACKAGE-$VERSION.tar.gz | |
| URL="https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/" | |
| ROOT_DIR=/tmp | |
| SOURCES_DIR=$ROOT_DIR/$PACKAGE-$VERSION | |
| BUILD_DIR=$SOURCES_DIR/build | |
| wget -q $URL/$TAR_FILE -O $ROOT_DIR/$TAR_FILE | |
| mkdir -p $SOURCES_DIR | |
| tar xzf $ROOT_DIR/$TAR_FILE -C $SOURCES_DIR --strip-components=1 | |
| cd $SOURCES_DIR | |
| ./configure --prefix=$PETSC_INSTALL --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 \ | |
| --download-mumps --download-scalapack --download-parmetis --download-metis \ | |
| --download-ptscotch --with-debugging --with-x=0 --with-shared=1 \ | |
| --with-mpi=1 --with-64-bit-indices | |
| make | |
| make install | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.add("MPIPreferences") | |
| - name: use MPI system binary | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary() | |
| - uses: julia-actions/julia-buildpkg@latest | |
| - run: echo $PWD | |
| - run: julia --project=. -e 'using Pkg; Pkg.instantiate(); Pkg.build(); Pkg.precompile()' | |
| - run: julia --project=. --color=yes --check-bounds=yes test/runtests.jl | |
| - uses: codecov/codecov-action@v1 | |
| with: | |
| file: lcov.info | |
| docs: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: '1' | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| - uses: julia-actions/julia-docdeploy@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - run: | | |
| julia --project=docs -e ' | |
| using Documenter: DocMeta, doctest | |
| using GridapSolvers | |
| DocMeta.setdocmeta!(GridapSolvers, :DocTestSetup, :(using GridapSolvers); recursive=true) | |
| doctest(GridapSolvers)' |