biskitbase

A Docker container with all biskit library requirements as well as third-party programs wrapped by biskit (but not biskit itself).

This container is the base layer used by the full biskit docker image graik/biskit. It contains all the dependencies for biskit and many of the third-party programs for which there exist biskit wrappers. It does not contain biskit itself.

The project contains an empty folder downloads. The docker script will look in this folder for certain third-party installation files that cannot be freely downloaded. See downloads/README.md for details.

Note: this container is optimized for running the Python 3.x version of Biskit (branch biskit3 in the github project).

Setup

To re-build it locally run (change the graik/biskitbase tag as appropriate):

git clone https://github.com/graik/biskitbase.git
cd biskitbase
docker build -t graik/biskitbase .

Then run the image interactively with:

docker run -it graik/biskitbase bash

Publish it to dockerstore with:

docker login
docker push graik/biskitbase