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SSSOM-Java 0.4.0
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@gouttegd gouttegd released this 26 Aug 10:17
· 353 commits to main since this release
sssom-java-0.4.0
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gouttegd Damien Goutte-Gattat
GPG key ID: 6F7F0F91D138FC7B
Learn about vigilant mode.

Changes since version 0.3.1

  • SSSOM/T-OWL:
    • New preprocessing functions check_subject_existence() and check_object_existence().
    • New function set_var() to declare mapping-dependent variables.
  • New ROBOT command xref-extract to get extract mappings from oboInOwl:hasDbXref annotations in an ontology.
  • New in sssom-inject:
    • Allow loading multiple mapping sets by repeating --sssom option as needed.
    • New option --extract to get a mapping set directly from oboInOwl:hasDbXref annotations in the ontology (may be combined with --sssom).
    • New add-axiom key in dispatch table entries.

Release artifacts

  • sssom-core-0.4.0.jar is the base Java library containing only the code from this project (dependencies are not included);
  • sssom-robot-plugin-0.4.0.jar is a plugin for ROBOT providing the sssom-inject and xref-extract commands, to be used with a version ROBOT that supports plugins (no such version has been released yet);
  • sssom-robot-standalone-0.4.0.jar includes a full distribution of ROBOT 1.9.4, where the sssom-inject and xref-extract commands from this project are readily available as built-in commands.
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