Merge pull request #23 from EPFL-ENAC/fix-ci-coverage

Fix CI coverage

.github/workflows/tests.yml

@@ -3,7 +3,7 @@ on: [push, pull_request, workflow_dispatch]
 
 jobs:
   tests:
-    name: ${{ matrix.os }}, Python ${{ matrix.python-version }}${{ matrix.experimental && ', latest dependencies' || '' }}
+    name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }}${{ matrix.experimental && ', latest dependencies' || '' }}
     runs-on: ${{ matrix.os }}
     defaults:
       run:
@@ -25,10 +25,6 @@ jobs:
             experimental: false
             coverage: true
 
-          - os: "windows-latest"
-            python-version: "3.11"
-            experimental: false
-
     steps:
       - uses: actions/checkout@v3
         with:
@@ -49,26 +45,23 @@ jobs:
 
       - name: Test with pytest
         run: |
-          pytest
+          pytest # See pyproject.toml for cov options
         env:
           HDF5_USE_FILE_LOCKING: FALSE
 
       - name: Upload coverage reports to Codecov
         uses: codecov/codecov-action@v3
         if: matrix.coverage
-        env:
-          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
-
-      - name: Generate coverage report in lcov format
-        if: matrix.coverage
-        run: |
-          coverage lcov -o coverage/lcov.info
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          files: coverage.xml
 
       - name: Coveralls Parallel
         uses: coverallsapp/github-action@v2
         if: matrix.coverage
         with:
           parallel: true
+          files: lcov.info
 
   end-coveralls:
     needs: [tests]

.github/workflows/tests_windows.yml

@@ -0,0 +1,37 @@
+name: Tests Windows
+on: [push, pull_request, workflow_dispatch]
+
+jobs:
+  tests:
+    name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }}${{ matrix.experimental && ' with latest dependencies' || '' }}
+    runs-on: ${{ matrix.os }}
+    defaults:
+      run:
+        shell: bash -el {0}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os: ["windows-latest"]
+        python-version: ["3.8", "3.9", "3.10", "3.11"]
+        experimental: [false]
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up micromamba and install package dependencies
+        uses: mamba-org/setup-micromamba@v1
+        with:
+          environment-file: ${{ matrix.experimental && 'ci/environment_latest.yml' || 'ci/environment.yml' }}
+          create-args: >-
+            python=${{ matrix.python-version }}
+          init-shell: >-
+            bash
+
+      - name: Install the package
+        run: |
+          pip install -e .[image,dev]
+
+      - name: Test with pytest
+        run: |
+          pytest

pyproject.toml

@@ -90,7 +90,7 @@ download_gpm_files="gpm_api.scripts.download_gpm_files:download_gpm_files"
 
 
 [tool.pytest.ini_options]
-addopts = "--ignore=gpm_api/tests/0_tmp/ --cov --cov-report term-missing --check-max-report=10"
+addopts = "--ignore=gpm_api/tests/0_tmp/ --cov --cov-report term-missing --cov-report xml --cov-report lcov:lcov.info --check-max-report=10"
 
 [tool.black]
 line-length = 100