[pre-commit.ci] auto fixes from pre-commit.com hooks

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ghiggi · Jun 13, 2023 · 0d1a0ee · 0d1a0ee
1 parent 5a8b3f6
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Showing 22 changed files with 17 additions and 18 deletions.
diff --git a/gpm_api/accessor/__init__.py b/gpm_api/accessor/__init__.py
@@ -4,6 +4,6 @@
 
 @author: ghiggi
 """
-from .methods import GPM_Dataset_Accessor, GPM_DataArray_Accessor
+from .methods import GPM_DataArray_Accessor, GPM_Dataset_Accessor
 
-__all__ = ["GPM_Dataset_Accessor", "GPM_DataArray_Accessor"]
+__all__ = ["GPM_Dataset_Accessor", "GPM_DataArray_Accessor"]
diff --git a/gpm_api/dataset/crs.py b/gpm_api/dataset/crs.py
@@ -318,7 +318,6 @@ def _add_proj_coords_attrs(ds, crs) -> xr.Dataset:
 
     # If available, add attributes
     if x_dim is not None and y_dim is not None:
-
         # Retrieve existing coordinate attributes
         src_x_coord_attrs = dict(ds[x_dim].attrs)
         src_y_coord_attrs = dict(ds[y_dim].attrs)

diff --git a/gpm_api/dataset/reader.py b/gpm_api/dataset/reader.py
@@ -372,7 +372,6 @@ def _get_granule_info(filepath, scan_mode, variables, groups):
     """Retrieve coordinates, attributes and valid variables and groups from the HDF file."""
     # Open HDF5 file
     with h5py.File(filepath, "r", locking=False, swmr=SWMR) as hdf:
-
         # Get coordinates
         coords = get_coords(hdf, scan_mode)
 

diff --git a/gpm_api/io/checks.py b/gpm_api/io/checks.py
@@ -123,11 +123,11 @@ def check_time(time):
         if np.issubdtype(time.dtype, np.datetime64):
             if time.size == 1:
                 time = time.astype("datetime64[s]").tolist()
-            else: 
+            else:
                 raise ValueError("Expecting a single timestep!")
-        else: 
+        else:
             raise ValueError("The numpy array does not have a np.datetime64 dtype!")
-            
+
     # If np.datetime64, convert to datetime.datetime
     if isinstance(time, np.datetime64):
         time = time.astype("datetime64[s]").tolist()

diff --git a/gpm_api/io/directories.py b/gpm_api/io/directories.py
@@ -376,7 +376,6 @@ def get_pps_directory(product, product_type, date, version):
     ##------------------------------------------------------------------------.
     #### RS data
     elif product_type == "RS":
-
         ## Specify servers
         url_server_text = "https://arthurhouhttps.pps.eosdis.nasa.gov/text"
         url_data_server = "ftps://arthurhouftps.pps.eosdis.nasa.gov"

diff --git a/gpm_api/io/download.py b/gpm_api/io/download.py
@@ -44,6 +44,7 @@
 # - credientials: <...>
 # --> "--header='Authorization: Basic Z2lvbmF0YS5naGlnZ2lAZXBmbC5jaDpnaW9uYXRhLmdoaWdnaUBlcGZsLmNo' "
 
+
 ##----------------------------------------------------------------------------.
 #############################
 #### Single file command ####
@@ -276,7 +277,6 @@ def _download_files(
     progress_bar=True,
     verbose=False,
 ):
-
     if transfer_tool == "curl":
         list_cmd = [
             curl_cmd(src_path, dst_path, username, username)

diff --git a/gpm_api/io/info.py b/gpm_api/io/info.py
@@ -30,7 +30,6 @@
 
 
 def _parse_GPM_fname(fname):
-
     # Retrieve information from filename
     p = Parser(NASA_FNAME_PATTERN)
     info_dict = p.parse(fname)

diff --git a/gpm_api/io/patterns.py b/gpm_api/io/patterns.py
@@ -4,6 +4,8 @@
 
 @author: ghiggi
 """
+
+
 # ----------------------------------------------------------------------------.
 #################################
 ### File Pattern dictionary  ####

diff --git a/gpm_api/io/scan_modes.py b/gpm_api/io/scan_modes.py
@@ -12,7 +12,6 @@
 
 
 def available_scan_modes(product, version):
-
     ##---------------------------------------------.
     #### TRMM Radar
     if product in ["1B-PR"]:

diff --git a/gpm_api/overpass/TODO_GPM_OVERPASS.py b/gpm_api/overpass/TODO_GPM_OVERPASS.py
@@ -44,6 +44,7 @@
         n_threads=10,
     )
 
+
 ####--------------------------------------------------------------------------.
 #### Compute overpass tables
 def generate_chunk_slices(chunks, shape):

diff --git a/gpm_api/overpass/TODO_OVERPASS_STATS.py b/gpm_api/overpass/TODO_OVERPASS_STATS.py
@@ -30,6 +30,7 @@
 products = GPM_PMW_2A_GPROF_RS_products()
 product_type = "RS"
 
+
 ####--------------------------------------------------------------------------.
 #### Define statistics to compute
 def _overpass_stats(df):

diff --git a/gpm_api/patch/labels.py b/gpm_api/patch/labels.py
@@ -25,6 +25,7 @@
 # Note
 # - label_xarray_object available as ds.gpm_api.label_object
 
+
 ####--------------------------------------------------------------------------.
 #####################
 #### Area labels ####

diff --git a/gpm_api/patch/labels_patch.py b/gpm_api/patch/labels_patch.py
@@ -263,7 +263,6 @@ def get_labeled_object_patches(
 
     # Extract patch around the label
     for label_id in labels_id[0:n_patches]:
-
         # Get label bounding box slices
         list_slices = _get_labels_bbox_slices(label_arr == label_id)
 

diff --git a/gpm_api/patch/utils.py b/gpm_api/patch/utils.py
@@ -72,6 +72,7 @@ def split_large_objects_slices(objects_slices, patch_size):
 #### Patch Extraction ####
 ##########################
 
+
 # get_patch_slices_around_point
 def get_patch_slices_around(row, col, patch_size, image_shape):
     if len(patch_size) != len(image_shape):

diff --git a/gpm_api/scripts/download_daily_gpm_data.py b/gpm_api/scripts/download_daily_gpm_data.py
@@ -14,6 +14,7 @@
 warnings.filterwarnings("ignore")
 sys.tracebacklimit = 0  # avoid full traceback error if occur
 
+
 # -------------------------------------------------------------------------.
 # Click Command Line Interface decorator
 @click.command()

diff --git a/gpm_api/scripts/download_monthly_gpm_data.py b/gpm_api/scripts/download_monthly_gpm_data.py
@@ -14,6 +14,7 @@
 warnings.filterwarnings("ignore")
 sys.tracebacklimit = 0  # avoid full traceback error if occur
 
+
 # -------------------------------------------------------------------------.
 # Click Command Line Interface decorator
 @click.command()

diff --git a/gpm_api/utils/utils_HDF5.py b/gpm_api/utils/utils_HDF5.py
@@ -219,6 +219,7 @@ def h5dump(filepath, group="/", dataset_attrs=True, group_attrs=True):
 #             for item in x.keys():
 #                 print_hdf5_shape(x[item])
 
+
 # -----------------------------------------------------------------------------.
 def hdf5_objects_names(hdf):
     l_objs = []

diff --git a/gpm_api/visualization/OLD_comparison.py b/gpm_api/visualization/OLD_comparison.py
@@ -20,7 +20,6 @@ def compare_products(
     version=7,
     product_type="RS",
 ):
-
     #### Preprocess bbox
     # - Enlarge so to be sure to include all data when cropping
     # TODO: Robustify to deal when close to the antimeridian

diff --git a/gpm_api/visualization/labels.py b/gpm_api/visualization/labels.py
@@ -96,7 +96,6 @@ def plot_label_patches(
     fig_kwargs={},
     **plot_kwargs,
 ):
-
     # Check plot_kwargs keys
     if "cbar_kwargs" in plot_kwargs:
         raise ValueError("'cbar_kwargs' can not be specified when plotting labels.")

diff --git a/gpm_api/visualization/orbit.py b/gpm_api/visualization/orbit.py
@@ -108,7 +108,6 @@ def wrapper(*args, **kwargs):
 
         # - Call the function over each slice
         for i, slc in enumerate(list_slices):
-
             # Retrive contiguous data array
             tmp_da = da.isel(along_track=slc)
 

diff --git a/gpm_api/visualization/plot.py b/gpm_api/visualization/plot.py
@@ -6,14 +6,12 @@
 """
 import cartopy
 import cartopy.crs as ccrs
-import matplotlib as mpl
 import matplotlib.pyplot as plt
 import numpy as np
 from matplotlib.collections import PolyCollection
 from mpl_toolkits.axes_grid1 import make_axes_locatable
 from scipy.ndimage import binary_dilation
 
-
 ### TODO: Add xarray + cartopy  (xr_carto) (xr_mpl)
 # _plot_cartopy_xr_imshow
 # _plot_cartopy_xr_pcolormesh
@@ -330,7 +328,6 @@ def plot_map(
     cbar_kwargs={},
     **plot_kwargs,
 ):
-
     from gpm_api.utils.geospatial import is_grid, is_orbit
 
     from .grid import plot_grid_map

diff --git a/tutorials/example_patches.py b/tutorials/example_patches.py
@@ -5,7 +5,9 @@
 @author: ghiggi
 """
 import datetime
+
 import numpy as np
+
 import gpm_api
 from gpm_api.patch.labels import xr_get_areas_labels