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* Add first examples to validation * Ignore GE intermediates * Update config comment * Update example
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{ "meta": "Validate example manifests against templates with schematic and data model.", | ||
"schematic_reference": { | ||
"version": "23.1.1", | ||
"flags" : | ||
{ | ||
"great_expectations" : true | ||
} | ||
}, | ||
"tests": [ | ||
{ | ||
"manifest": "examples/my_cohort.csv", | ||
"template": "CohortCoreTemplate", | ||
"expect_pass": true, | ||
"expectation": "Should pass", | ||
"comment": "Contains mock data for two patients" | ||
} | ||
] | ||
} |
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Component,ParticipantID,TimepointLabel,Age,Sex,BMI,Race,Ethnicity,VitalStatus,Height,Weight,Gravidity,Parity,AgeAtMenarche,MenstrualCyclePhase,MenopauseStatus,PrimaryDiagnosis,AgeatDiagnosis,DiagnosisStatusType,ClassBRCA1,ClassBRCA2,TobaccoUse,PackYearsSmoked,AlcoholUse,NumberofDrinksPerWeek,AntibioticUse,SampleCollectionCenter,SampleCollectionYear,ERStatus,PRStatus,HER2Status,Id,entityId | ||
CohortCoreTemplate,ABC123,,30,female,30.5,white,not hispanic or latino,Alive,Not Reported,Not Reported,0,0,12,Not Reported,Pre,,Not Reported,Not Applicable,Positive,,Former,Unknown- 2yrs,Yes,2,Unknown,MGH,Not Reported,Positive,,,f4fa455b-a495-4ffa-b807-7525947da662,syn53461756 | ||
CohortCoreTemplate,ABC456,,31,female,22.2,white,not hispanic or latino,Alive,Not Reported,Not Reported,1,1,13,Not Reported,Pre,,Not Reported,Not Applicable,Positive,,Never,0.3ppd-unknown,Occasionally,<1,Unknown,MGH,Not Reported,Positive,Negative,Negative,6d049ab5-f089-4c32-9306-f9fb4765ca20,syn53461756 |