To get the existing data, simply git clone:
git clone [email protected]:getzlab/SimulatedTumorData.git
To generate new patient data (in particular, rerunning phylogic), include --recurse-submodules
git clone [email protected]:getzlab/SimulatedTumorData.git --recurse-submodules
- Git clone (above)
- See
generate_simulated_data.ipynb
as an example notebook