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132 Open 179 Closed
132 Open 179 Closed
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Issues list

Consider producing cross-channel signal analysis in multiple forms enhancement New feature or request
#379 opened Nov 25, 2024 by vreuter v0.11.1
@vreuter
Update documentation for v0.11.0 documentation Improvements or additions to documentation priority high
#378 opened Nov 25, 2024 by vreuter v0.11.1
Remove regional spot timepoints from big "locus-specific" collection for signal analysis enhancement New feature or request
#376 opened Nov 24, 2024 by vreuter v0.12
Better encoding of what's imaged in each channel brainstorming configuration enhancement New feature or request
#375 opened Nov 20, 2024 by vreuter v0.12
@vreuter @TLSteinacker
@ines-prlesi @josephneos1010
1
Make distance threshold (proximity filtration, ROI merge) carry units enhancement New feature or request priority high refactor
#373 opened Nov 18, 2024 by vreuter v0.12
@vreuter
1
Update spot count plotting/visualisation programs to deal with same- and different-timepoint mergers enhancement New feature or request visualisation
#370 opened Nov 18, 2024 by vreuter v0.12
1
Remove local Eq and Order instances for FieldOfViewLike refactor
#369 opened Nov 16, 2024 by vreuter
3 tasks
v0.12
Migrate pixel quantity to gerlib refactor
#366 opened Nov 7, 2024 by vreuter v0.12
@vreuter
Migrate CellEncoder[EuclideanDistance] to gerlib refactor
#365 opened Nov 7, 2024 by vreuter v0.12
@vreuter
Representing processing state of data on disk brainstorming enhancement New feature or request refactor
#364 opened Nov 7, 2024 by vreuter
Representing units in on-disk representation of numeric values brainstorming enhancement New feature or request refactor
#363 opened Nov 7, 2024 by vreuter
1
Replace R with xchart refactor visualisation
#357 opened Nov 5, 2024 by vreuter v0.12
Rename index to roiId (or similar) enhancement New feature or request priority high refactor
#354 opened Nov 4, 2024 by vreuter v0.12
Try to remove indirect / derived need for UCAR resolver in build.sbt priority low
#349 opened Jul 29, 2024 by vreuter
Apply fine drift correction for nuclei image(s) and use it in ROI-to-nucleus assignment enhancement New feature or request IF nuclei priority high
#343 opened Jul 11, 2024 by vreuter v0.12
@vreuter
2
Replace scala-csv with fs2-data refactor
#340 opened Jul 6, 2024 by vreuter v0.12
2
Consider tests with Nonnegative values having Double.PositiveInfinity priority high testing
#339 opened Jul 5, 2024 by vreuter next release
@vreuter
Addition of analysis of non-FISH signal in regions defined by FISH signal enhancement New feature or request IF nuclei pipeline priority high
#337 opened Jun 26, 2024 by vreuter
1 of 8 tasks
v0.11.1
@vreuter
9
Add documentation of resource use hooks for coarse drift correction configuration documentation Improvements or additions to documentation priority high
#335 opened Jun 20, 2024 by vreuter next release
@vreuter
Tasks for switching to per-FOV structure, cluster-deployed execution cluster refactor umbrella
#334 opened Jun 20, 2024 by vreuter
1 task
Apply flat-field correction enhancement New feature or request
#327 opened May 30, 2024 by vreuter
Smooth background for subtraction in tracing enhancement New feature or request
#326 opened May 30, 2024 by vreuter
1
We need more stable, sustainable conversion of ND2 to ZARR priority high
#321 opened May 24, 2024 by vreuter
3 tasks
v0.12
@vreuter
1
Write out metadata from the nd2 files data enhancement New feature or request priority high
#317 opened May 7, 2024 by vreuter v0.12
@vreuter
1
Make coarse drift correction incremental like fine drift correction enhancement New feature or request priority low
#316 opened May 7, 2024 by vreuter
1
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