Unpin pyarrow version #178
Workflow file for this run
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| name: test-python | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - '.github/workflows/python.yaml' | |
| - 'src/geoarrow/**' | |
| - 'python/**' | |
| jobs: | |
| test-python: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ['3.10'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: Install (geoarrow-c) | |
| run: | | |
| pushd python/geoarrow-c | |
| pip install ".[test]" | |
| - name: Install (geoarrow-pyarrow) | |
| run: | | |
| pushd python/geoarrow-pyarrow | |
| pip install ".[test]" | |
| - name: Install (geoarrow-pandas) | |
| run: | | |
| pushd python/geoarrow-pandas | |
| pip install ".[test]" | |
| - name: Run tests (geoarrow-c) | |
| run: | | |
| pytest python/geoarrow-c/tests -v -s | |
| - name: Run tests (geoarrow-pyarrow) | |
| run: | | |
| pytest python/geoarrow-pyarrow/tests -v -s | |
| - name: Run tests (geoarrow-pandas) | |
| run: | | |
| pytest python/geoarrow-pandas/tests -v -s | |
| - name: Install coverage dependencies | |
| run: | | |
| sudo apt-get install -y lcov | |
| pip install pytest-cov Cython | |
| - name: Install editable | |
| run: | | |
| for pkg in c pyarrow pandas; do | |
| pip install -e python/geoarrow-$pkg/ | |
| done | |
| - name: Coverage (geoarrow-c) | |
| if: success() && matrix.python-version == '3.10' | |
| run: | | |
| pushd python/geoarrow-c | |
| # Build with Cython + gcc coverage options | |
| GEOARROW_COVERAGE=1 python setup.py build_ext --inplace | |
| # Run tests | |
| python -m pytest --cov ./src/geoarrow .. | |
| # Generate xml Python coverage | |
| python -m coverage xml | |
| # Generate C coverage | |
| lcov \ | |
| --capture --directory build \ | |
| --exclude "/usr/*" \ | |
| --exclude "/opt/*" \ | |
| --exclude "/Library/*" \ | |
| --exclude "*/_lib.cpp" \ | |
| --exclude "*/src/geoarrow/c/geoarrow/*" \ | |
| --output-file=coverage.info | |
| lcov --list coverage.info | |
| popd | |
| - name: Coverage (geoarrow-pyarrow, geoarrow-pandas) | |
| if: success() && matrix.python-version == '3.10' | |
| run: | | |
| # Have to install non-editable geoarrow-c or xml generation will not work | |
| # because it gets confused about the .pxd file | |
| pip uninstall --yes geoarrow-c | |
| pip install python/geoarrow-c/ | |
| pushd python/geoarrow-pyarrow | |
| python -m pytest --cov ./src/geoarrow .. | |
| python -m coverage xml | |
| popd | |
| pushd python/geoarrow-pandas | |
| python -m pytest --cov ./src/geoarrow .. | |
| python -m coverage xml | |
| popd | |
| - name: Upload coverage to codecov | |
| if: success() && matrix.python-version == '3.10' | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| files: 'python/geoarrow-c/geoarrow-coverage.info,python/geoarrow-c/coverage.xml,python/geoarrow-pyarrow/coverage.xml,python/geoarrow-pandas/coverage.xml' | |
| - name: Run doctests | |
| if: success() && matrix.python-version == '3.10' | |
| run: | | |
| # Because of namespace packaging we have to add __init__.py in geoarrow and | |
| # rebuild to avoid confusing pytest | |
| for pkg in c pyarrow pandas; do | |
| pushd python/geoarrow-$pkg | |
| touch src/geoarrow/__init__.py | |
| pip uninstall --yes geoarrow-$pkg | |
| pip install . | |
| pytest --pyargs geoarrow.$pkg --doctest-modules | |
| popd | |
| done |