Fix GeoDataset for non-extension type column (e.g., overature) #112

	name: test-python

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main
	paths:
	- '.github/workflows/python.yaml'
	- 'src/geoarrow/**'
	- 'python/**'

	jobs:
	test-python:

	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: [ubuntu-latest]
	python-version: ['3.10']

	steps:
	- uses: actions/checkout@v3

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	cache: 'pip'

	- name: Install geoarrow
	run: \|
	pushd python
	pip install .[test]
	popd
	pip list

	- name: Run tests
	run: \|
	pytest python/tests -v -s

	- name: Run doctests
	if: success() && matrix.python-version == '3.10'
	run: \|
	# Needs editable install to run --doctest-modules
	pip install -e python
	pytest python --doctest-modules

	- name: Coverage
	if: success() && matrix.python-version == '3.10'
	run: \|
	sudo apt-get install -y lcov
	pip uninstall --yes geoarrow
	pip install pytest-cov "Cython <= 0.29.36"
	pushd python

	# Build with Cython + gcc coverage options
	GEOARROW_COVERAGE=1 python3 setup.py build_ext --inplace

	# Run tests + coverage.py (generates .coverage + coverage.xml files)
	python -m pytest --cov ./geoarrow
	python -m coverage xml

	# Collect C coverage information
	lcov \
	--capture --directory build \
	--exclude "/usr/*" \
	--exclude "/Library/*" \
	--exclude "*/_lib.cpp" \
	--exclude "/geoarrow/geoarrow/" \
	--output-file=coverage.info

	lcov --list coverage.info

	- name: Upload coverage to codecov
	if: success() && matrix.python-version == '3.10'
	uses: codecov/codecov-action@v2
	with:
	files: 'python/coverage.info,python/coverage.xml'

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