Merge pull request nf-core#625 from nf-core/module_updates

Update genmod and multiqc
genomic-medicine-sweden · Oct 8, 2024 · a087573 · a087573
2 parents f49a3bb + e7dcd27
commit a087573
Show file tree

Hide file tree

Showing 13 changed files with 35 additions and 34 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -29,8 +29,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 | Tool     | Old version | New version |
 | -------- | ----------- | ----------- |
 | bcftools | 1.18        | 1.20        |
+| genmod   | 3.8.2       | 3.8.3       |
 | mosdepth | 0.3.6       | 0.3.8       |
-| multiqc  | 1.21        | 1.25        |
+| multiqc  | 1.21        | 1.25.1      |
 | picard   | 3.1.1       | 3.2.0       |
 | samtools | 1.19.2      | 1.21        |
 | sentieon | 202308.02   | 202308.03   |

diff --git a/modules.json b/modules.json
@@ -243,22 +243,22 @@
                     },
                     "genmod/annotate": {
                         "branch": "master",
-                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
+                        "git_sha": "55692e15e2ef8be6b37ad1475944a338770b4b3e",
                         "installed_by": ["modules"]
                     },
                     "genmod/compound": {
                         "branch": "master",
-                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
+                        "git_sha": "55692e15e2ef8be6b37ad1475944a338770b4b3e",
                         "installed_by": ["modules"]
                     },
                     "genmod/models": {
                         "branch": "master",
-                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
+                        "git_sha": "55692e15e2ef8be6b37ad1475944a338770b4b3e",
                         "installed_by": ["modules"]
                     },
                     "genmod/score": {
                         "branch": "master",
-                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
+                        "git_sha": "55692e15e2ef8be6b37ad1475944a338770b4b3e",
                         "installed_by": ["modules"]
                     },
                     "glnexus": {
@@ -294,7 +294,7 @@
                     },
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
+                        "git_sha": "b8d36829fa84b6e404364abff787e8b07f6d058c",
                         "installed_by": ["modules"]
                     },
                     "ngsbits/samplegender": {

diff --git a/modules/nf-core/genmod/annotate/environment.yml b/modules/nf-core/genmod/annotate/environment.yml
diff --git a/modules/nf-core/genmod/annotate/main.nf b/modules/nf-core/genmod/annotate/main.nf
diff --git a/modules/nf-core/genmod/compound/environment.yml b/modules/nf-core/genmod/compound/environment.yml
diff --git a/modules/nf-core/genmod/compound/main.nf b/modules/nf-core/genmod/compound/main.nf
diff --git a/modules/nf-core/genmod/models/environment.yml b/modules/nf-core/genmod/models/environment.yml
diff --git a/modules/nf-core/genmod/models/main.nf b/modules/nf-core/genmod/models/main.nf
diff --git a/modules/nf-core/genmod/score/environment.yml b/modules/nf-core/genmod/score/environment.yml
diff --git a/modules/nf-core/genmod/score/main.nf b/modules/nf-core/genmod/score/main.nf
diff --git a/modules/nf-core/multiqc/environment.yml b/modules/nf-core/multiqc/environment.yml
diff --git a/modules/nf-core/multiqc/main.nf b/modules/nf-core/multiqc/main.nf
diff --git a/modules/nf-core/multiqc/tests/main.nf.test.snap b/modules/nf-core/multiqc/tests/main.nf.test.snap