MIMOSA

Installation and Running the Application

git clone https://github.com/genomic-medicine-sweden/MIMOSA

cd MIMOSA

vi config.json #edit API_URL

docker compose up -d
 

MIMOSA can then be viewed in the browser at localhost:3000

Uploading & Deleting Data

scripts/upload_sample.py ./config.json test_data/test_samples.json #uploads test data to MIMOSA
scripts/upload_similarity.py ./config.json test_data/test_similarity.json #uploads test similarity data to MIMOSA

scripts/delete_sample.py ./config.json test_data/test_samples.json #deletes test data from MIMOSA
scripts/delete_similarity.py ./config.json test_data/test_similarity.json #deletes test similarity data from MIMOSA

conda environment

 conda create -n mimosa python=3.11

 conda activate mimosa

 pip install -r scripts/requirements.txt

Links

Sweden Boundaries

Postcodes