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genepi / mtdna-server-2 Public

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Create a report per sample with details#14

Merged

lukfor merged 12 commits intomaingenepi/mtdna-server-2:mainfrom features/sample-reportgenepi/mtdna-server-2:features/sample-reportCopy head branch name to clipboard

Mar 2, 2024

+17,192-40

Conversation Commits12 (12)Checks Files changed

Commits

Commits on Mar 1, 2024

Add rmd report for a single sample and add versions to Docker
lukfor
committed
Fix number of tasks in snapshot
lukfor
committed
Add testcase for 6 samples
lukfor
committed
Test different modi
seppinho
committed

Commits on Mar 2, 2024

Fix warning with empty exclude files
lukfor
committed
Merge branch 'features/sample-report' of github.com:genepi/mtdna-server-3 into features/sample-report
lukfor
committed
Add contamination status to summary table and commit snapshots
lukfor
committed
Fix variant counting and add qc status
lukfor
committed
Add coverage plot to sample report
lukfor
committed
Merge branch 'main' into features/sample-report
lukfor
authored
Fix issue with multiple contigs in coverage report
lukfor
committed
Sort duplicate variants by ref and alt
lukfor
committed

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