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Prepare release v2.1.14
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seppinho committed Jul 18, 2024
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6 changes: 4 additions & 2 deletions README.md
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Expand Up @@ -9,6 +9,8 @@ mtDNA-Server 2 is a Nextflow DSL2 pipeline to accurately detect heteroplasmic an

## Version History

Release [v2.1.14](../../releases/tag/v2.1.14) - Load resource conf

Release [v2.1.13](../../releases/tag/v2.1.13) - Update to latest Haplogrep3

Release [v2.1.12](../../releases/tag/v2.1.12) - Install Haplogrep3 tree directly.
Expand Down Expand Up @@ -40,12 +42,12 @@ To run mtDNA-Server 2 via Nextflow, please execute the following steps.

2. Run the pipeline on our test dataset and select either Docker, Singluarity or Slurm.
```
nextflow run genepi/mtdna-server-2 -r v2.1.13 -profile test,<docker,singularity,slurm>
nextflow run genepi/mtdna-server-2 -r v2.1.14 -profile test,<docker,singularity,slurm>
```
### Run Pipeline on own data
To run mtDNA-Server 2 on your own data, create a [config file](tests/test_mitohpc_fusion.config) and run the following command:
```
nextflow run genepi/mtdna-server-2 -r v2.1.13 -c <your-config-file> -profile docker
nextflow run genepi/mtdna-server-2 -r v2.1.14 -c <your-config-file> -profile docker
```

### Parameters
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2 changes: 1 addition & 1 deletion cloudgene.yaml
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Expand Up @@ -2,7 +2,7 @@ id: mtdna-server-2
name: mtDNA-Server 2 - Mitochondrial Variant Calling
description: "A free web service to analyze your mtDNA NGS data. The service accepts data in BAM format aligned against the rCRS reference and returns homoplasmic and heteroplasmic variants in return. <br>Feel free to <a href=\"https://github.com/genepi/mtdna-server-2/?tab=readme-ov-file#contact\"><u>contact us</u></a> if you have issues running the pipeline.<br><br>No dataset at hand? No problem, download and extract our example dataset: <a href=\"https://mitoverse.i-med.ac.at/downloads/6-samples.zip\" class=\"btn btn-sm btn-secondary\" style=\"color:#ffffff !important\"><i class=\"fa fa-file\"></i> 6-samples.zip</a><br><br>"

version: v2.1.13
version: v2.1.14
website: https://mitoverse.readthedocs.io/
category:

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2 changes: 1 addition & 1 deletion nextflow.config
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manifest {
name = 'mtDNA-Server 2'
version = 'v2.1.13'
version = 'v2.1.14'
description = 'mtDNA Variant Calling'
author = 'Sebastian Schönherr, Hansi Weissensteiner, Lukas Forer'
homePage = 'https://github.com/genepi/mtdna-server-2'
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