Prepare release 2.0.0-beta1

genepi · Dec 18, 2023 · bd08201 · bd08201
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diff --git a/files/imputationserver-beagle.yaml b/files/imputationserver-beagle.yaml
@@ -1,7 +1,7 @@
 id: imputationserver-beagle
 name: Genotype Imputation supporting Beagle (Minimac4)
 description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix  (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
-version: 1.8.0
+version: 2.0.0-beta1
 website: https://imputationserver.readthedocs.io
 category:
 

diff --git a/files/imputationserver-hla.yaml b/files/imputationserver-hla.yaml
@@ -1,7 +1,7 @@
 id: imputationserver-hla
 name: Genotype Imputation HLA (Minimac4)
 description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix  (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
-version: 1.8.0
+version: 2.0.0-beta1
 website: https://imputationserver.readthedocs.io
 category:
 

diff --git a/files/imputationserver-pgs.yaml b/files/imputationserver-pgs.yaml
@@ -3,7 +3,7 @@ name: Polygenic Score Calculation
 description: "You can upload genotyped data and the application imputes your genotypes, performs ancestry estimation and finally calculates Polygenic Risk Scores.<br><br>No dataset at hand? No problem, download our example dataset: <a href=\"https://imputationserver.sph.umich.edu/downloads/50-samples.zip\" class=\"btn btn-sm btn-secondary\" style=\"color:#ffffff !important\"><i class=\"fa fa-file\"></i> 50-samples.zip</a><br><br>"
 
 
-version: 1.8.0
+version: 2.0.0-beta1
 website: https://imputationserver.readthedocs.io/en/latest/pgs/getting-started
 category:
 

diff --git a/files/minimac4.yaml b/files/minimac4.yaml
@@ -1,7 +1,7 @@
 id: imputationserver
 name: Genotype Imputation (Minimac4)
 description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix  (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
-version: 1.8.0
+version: 2.0.0-beta1
 website: https://imputationserver.readthedocs.io
 category:
 

diff --git a/pom.xml b/pom.xml
@@ -5,7 +5,7 @@
 
 	<groupId>genepi</groupId>
 	<artifactId>imputationserver</artifactId>
-	<version>1.8.0</version>
+	<version>2.0.0-beta1</version>
 	<packaging>jar</packaging>
 	<name>University of Michigan Imputation Server</name>
 	<url>http://maven.apache.org</url>

diff --git a/src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java b/src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java
@@ -24,7 +24,7 @@
 
 public class ImputationPipeline {
 
-	public static final String PIPELINE_VERSION = "michigan-imputationserver-1.8.0";
+	public static final String PIPELINE_VERSION = "michigan-imputationserver-2.0.0-beta1";
 
 	public static final String IMPUTATION_VERSION = "minimac-v4.1.6";