Skip to content

Commit

Permalink
Update index.md
Browse files Browse the repository at this point in the history
  • Loading branch information
skjandu authored Jun 6, 2024
1 parent 5455397 commit 13ec0f6
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions docs/v1/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -58,7 +58,7 @@ The raw PBM dataset for a transcription factor is downloaded from [uniPROBE](htt

## Input Files

1. Raw PBM Input (.tsv)
1. raw PBM input (.tsv)
- Columns
- `8-mer:` every possible forward k-mer sequence with length k
- `8-mer:` the reverse complement of the forward k-mer
Expand All @@ -77,7 +77,7 @@ AAAAAACA TTTTTTGT 0.19839 2407.46 1.8310
## Output Files

1. Normalized PBM data (.tsv)
1. normalized PBM data (.tsv)
- Columns
- `PBM Kmer:` the sequence of every possible k-mer
- `PBM Relative Affinity:` the relative affinity of each k-mer normalized to the k-mer with the highest MFI
Expand All @@ -91,7 +91,7 @@ AAAAAAAT 0.13
AAAAAACA 0.12
```

2. Histograms of Relative Affinities (.png)
2. histograms of relative affinities (.png)
- Histogram plots
- All relative affinity values
- Relative affinity values for the sequences that follow the TF binding site definition
Expand Down

0 comments on commit 13ec0f6

Please sign in to comment.