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import os | ||
import json | ||
import httpx | ||
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from pyDataverse.api import DataAccessApi, NativeApi | ||
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class TestDataAccess: | ||
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def test_get_data_by_id(self): | ||
"""Tests getting data file by id.""" | ||
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# Arrange | ||
BASE_URL = os.getenv("BASE_URL").rstrip("/") | ||
API_TOKEN = os.getenv("API_TOKEN") | ||
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assert BASE_URL is not None, "BASE_URL is not set" | ||
assert API_TOKEN is not None, "API_TOKEN is not set" | ||
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# Create dataset | ||
metadata = json.load(open("tests/data/file_upload_ds_minimum.json")) | ||
pid = self._create_dataset(BASE_URL, API_TOKEN, metadata) | ||
api = DataAccessApi(BASE_URL, API_TOKEN) | ||
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# Upload a file | ||
self._upload_datafile(BASE_URL, API_TOKEN, pid) | ||
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# Retrieve the file ID | ||
file_id = self._get_file_id(BASE_URL, API_TOKEN, pid) | ||
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# Act | ||
response = api.get_datafile(file_id, is_pid=False) | ||
response.raise_for_status() | ||
content = response.content.decode("utf-8") | ||
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# Assert | ||
expected = open("tests/data/datafile.txt").read() | ||
assert content == expected, "Data retrieval failed." | ||
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def test_get_data_by_pid(self): | ||
"""Tests getting data file by id. | ||
Test runs with a PID instead of a file ID from Harvard. | ||
No PID given if used within local containers | ||
TODO - Check if possible with containers | ||
""" | ||
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# Arrange | ||
BASE_URL = "https://dataverse.harvard.edu" | ||
pid = "doi:10.7910/DVN/26093/IGA4JD" | ||
api = DataAccessApi(BASE_URL) | ||
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# Act | ||
response = api.get_datafile(pid, is_pid=True) | ||
response.raise_for_status() | ||
content = response.content | ||
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# Assert | ||
expected = self._get_file_content(BASE_URL, pid) | ||
assert content == expected, "Data retrieval failed." | ||
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@staticmethod | ||
def _create_dataset( | ||
BASE_URL: str, | ||
API_TOKEN: str, | ||
metadata: dict, | ||
): | ||
""" | ||
Create a dataset in the Dataverse. | ||
Args: | ||
BASE_URL (str): The base URL of the Dataverse instance. | ||
API_TOKEN (str): The API token for authentication. | ||
metadata (dict): The metadata for the dataset. | ||
Returns: | ||
str: The persistent identifier (PID) of the created dataset. | ||
""" | ||
url = f"{BASE_URL}/api/dataverses/root/datasets" | ||
response = httpx.post( | ||
url=url, | ||
json=metadata, | ||
headers={ | ||
"X-Dataverse-key": API_TOKEN, | ||
"Content-Type": "application/json", | ||
}, | ||
) | ||
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response.raise_for_status() | ||
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return response.json()["data"]["persistentId"] | ||
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@staticmethod | ||
def _get_file_id( | ||
BASE_URL: str, | ||
API_TOKEN: str, | ||
pid: str, | ||
): | ||
"""Retrieves a file ID for a given persistent identifier (PID) in Dataverse.""" | ||
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response = httpx.get( | ||
url=f"{BASE_URL}/api/datasets/:persistentId/?persistentId={pid}", | ||
headers={ | ||
"X-Dataverse-key": API_TOKEN, | ||
"Content-Type": "application/json", | ||
} | ||
) | ||
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response.raise_for_status() | ||
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return response.json()["data"]["latestVersion"]["files"][0]["dataFile"]["id"] | ||
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@staticmethod | ||
def _upload_datafile( | ||
BASE_URL: str, | ||
API_TOKEN: str, | ||
pid: str, | ||
): | ||
"""Uploads a file to Dataverse""" | ||
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url = f"{BASE_URL}/api/datasets/:persistentId/add?persistentId={pid}" | ||
response = httpx.post( | ||
url=url, | ||
files={"file": open("tests/data/datafile.txt", "rb")}, | ||
headers={ | ||
"X-Dataverse-key": API_TOKEN, | ||
}, | ||
) | ||
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response.raise_for_status() | ||
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@staticmethod | ||
def _get_file_content( | ||
BASE_URL: str, | ||
pid: str, | ||
): | ||
"""Retrieves the file content for testing purposes.""" | ||
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response = httpx.get( | ||
url=f"{BASE_URL}/api/access/datafile/:persistentId/?persistentId={pid}", | ||
follow_redirects=True, | ||
) | ||
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response.raise_for_status() | ||
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return response.content |