add patch for Rhdf5lib

garadar · Apr 16, 2024 · 63c8afd · 63c8afd
1 parent 88c78ba
commit 63c8afd
Showing 1 changed file with 15 additions and 0 deletions.
diff --git a/easybuild/easyconfigs/r/R-bundle-Bioconductor/Rhdf5lib-1.20.0_fix_hardcoded_path_to_mv.patch b/easybuild/easyconfigs/r/R-bundle-Bioconductor/Rhdf5lib-1.20.0_fix_hardcoded_path_to_mv.patch
@@ -0,0 +1,15 @@
+Replace the call to /bin/mv by mv in the configure file of the included HDF5 source tarball.
+This prevents issues when building with a non-default sysroot.
+
+Author: Bob Dröge (University of Groningen)
+diff -ru Rhdf5lib.orig/src/Makevars.in Rhdf5lib/src/Makevars.in
+--- Rhdf5lib.orig/src/Makevars.in	2022-11-01 20:04:33.000000000 +0100
++++ Rhdf5lib/src/Makevars.in	2024-04-16 20:32:22.028694313 +0200
+@@ -48,6 +48,7 @@
+
+ build-hdf5: @REQUIRE_SZIP@ @EXTRACT_SOURCE@
+ 	cd hdf5; \
++	sed -i "s|/bin/mv|mv|" ./configure; \
+ 	./configure --with-pic --enable-shared=no --enable-cxx --enable-hl \
+ 	--enable-tests=no --enable-tools=no \
+ 	--with-szlib=@SZIP_HOME@ --with-zlib=@ZLIB_HOME@ \