v5.0.0-rc2

What's Changed

• BDRSPS-931: Changes to visit_site_protocol.py by @chungvl in #306
• BDRSPS-966: Part1: Update IRIs appearing in survey metadata v2 RDF by @Lincoln-GR in #304
• BDRSPS-979 docs.tables.fields module refactored by @joecrowleygaia in #308
• BDRSPS-966 Update IRI construction for incidental v3 template by @Lincoln-GR in #309
• BDRSPS-966 Update IRI construction for Survey Occurrence v2 template by @Lincoln-GR in #311
• BDRSPS-819 Made necessary tests or changes to types code after investigating low coverage on tests. by @joecrowleygaia in #310
• BDRSPS-966 SSD Site and SiteVisit IRI construction by @Lincoln-GR in #312
• BDRSPS-966 Further updates to IRI patterns by @Lincoln-GR in #313
• Add some more attribution IRI role types by @Lincoln-GR in #315
• BDRSPS-966 IRI patterns for flexible vocab Concepts by @Lincoln-GR in #314
• BDRSPS-980 Added model documentation check to ci by @joecrowleygaia in #316
• BDRSPS-747 Renamed types package to models. by @joecrowleygaia in #317
• Show diff when checking ruff format by @Lincoln-GR in #318
• BDRSPS-1009 Add mapping for organism quantity to incidental v3 template by @Lincoln-GR in #319
• BDRSPS-966 Supply base_iri to 2 vocabs in incidental template v3 mapping that need it by @Lincoln-GR in #321
• BDRSPS-1007 Change scientificName and threatStatus observations to always have occurrence as the featureOfInterest by @Lincoln-GR in #320
• BDRSPS-1014 Remove the isSampleOf predicate for sites by @Lincoln-GR in #323
• BDRSPS-1016 Make siteVisitStart field mandatory for site visit template by @Lincoln-GR in #324
• BDRSPS-1022 Update ISO role codes to BDR equivalents by @Lincoln-GR in #326
• BDRSPS-1027 Remove default value from site vocab by @Lincoln-GR in #329
• BDRSPS-1025 Made related site node type and value be dependent on the value of the relationshipToRelatedSite field of the site template. by @joecrowleygaia in #331
• BDRSPS-1029 Refactor so that extra_fields_schema is only called once per template mapping by @Lincoln-GR in #330
• BDRSPS-1032 Change organism quantity value label by @Lincoln-GR in #333
• BDRSPS-1030 Split out site into its own node on site visit template. by @joecrowleygaia in #334
• BDRSPS-1010 Rejigged the extra fields schema creation logic by @joecrowleygaia in #325
• BDRSPS-1031 swap tern:hasSite for sosa:isSampleOf for linking occurrence and site by @Lincoln-GR in #332
• BDRSPS-1038 Ensure that every chunk has a dataset type triple by @Lincoln-GR in #336
• BDRSPS-1039 Add void:inDataset properties to the prov:Plan nodes by @Lincoln-GR in #335
• BDRSPS-1042 Add basic site visit nodes to occurrence template mapping by @Lincoln-GR in #337
• BDRSPS-1044 Add basic Survey nodes to site visit template mapping by @Lincoln-GR in #339
• BDRSPS-1043 Add basic Survey nodes to occurrence template mapping by @Lincoln-GR in #338
• BDRSPS-1035 Created new column for field location on templates for instructions. by @joecrowleygaia in #340
• BDRSPS-1045 Move dwc:catalogNumber and dwc:collectionCode to the dwc:Occurrence node by @Lincoln-GR in #341
• BDRSPS-1048 Add extra fields mapping for site visit template by @Lincoln-GR in #342
• BDRSPS-1017: bumped version to v5.0.0-rc2 by @serge-gaia in #343

Full Changelog: v5.0.0-rc1...v5.0.0-rc2

v5.0.0-rc1

What's Changed

• BDRSPS-854 Survey site visit v2 single-template validation by @Lincoln-GR in #242
• BDRSPS-889 Update archived incidental v1 docs by @Lincoln-GR in #255
• BDRSPS-737 Implemented id datatype changes by @joecrowleygaia in #256
• BDRSPS-909 Cache the creation of pyproj objects by @Lincoln-GR in #258
• BDRSPS-798 Added default temporal entity mapper extraction method. by @joecrowleygaia in #259
• [BDRSPS-896] Added template_status to template metadata schema by @chungvl in #257
• BDRSPS-900 Archive incidental template v1 by @Lincoln-GR in #260
• BDRSPS-887 Wording updates to the site data v2 docs by @Lincoln-GR in #265
• BDRSPS-913 Added site visit id cross validation input to site visit template. by @joecrowleygaia in #264
• [BDRSPS-896] Part 2 - de-capitalise template lifecycle statuses by @chungvl in #262
• BDRSPS-868 Survey site data v2 RDF mapping by @Lincoln-GR in #245
• BDRSPS-904 Add notices to docs when a template is deprecated or in beta. by @Lincoln-GR in #263
• Add docstring for test_extend_uri by @Lincoln-GR in #266
• BDRSPS-886 Survey Metadata v2 docs update by @Lincoln-GR in #267
• BDRSPS-922 Implement SamplingEffortUnit vocab by @Lincoln-GR in #268
• BDRSPS-885 Made changes to survey occurrence v2 instructions. by @joecrowleygaia in #271
• BDRSPS-916 Temporal flexibility occurrence side implementation ssd. by @joecrowleygaia in #269
• BDRSPS-929 Remove link from sites to attributes. by @Lincoln-GR in #270
• BDRSPS-925 Add SampleCollections for certain attributes in the incidental v3 mapping by @Lincoln-GR in #272
• BDRSPS-872 Rectified issue of incorrect xy placement of coordinates when generating rdf wkt literals with crs defined. by @joecrowleygaia in #273
• BDRSPS-932: Made it so no rows in instructions are generated when a field only contains unpublishable vocabs. by @joecrowleygaia in #275
• BDRSPS-919 Update sampling Protocol vocab with new terms by @Lincoln-GR in #274
• BDRSPS-936 Swap tern:SampleCollection for tern:Collection in site data v2 mapping by @Lincoln-GR in #277
• BDRSPS-937 Skip rows with no siteID when extracting geometry defaults by @Lincoln-GR in #276
• BDRSPS-925 Fix: swap tern:SampleCollection for tern:Collection in incidental v3 mapping by @Lincoln-GR in #278
• BDRSPS-925 Add Collections for certain attributes in the survey occurrence v2 mapping by @Lincoln-GR in #279
• BDRSPS-925 Minor fixes to Attribute Collections by @Lincoln-GR in #281
• Poetry lock file check by @Lincoln-GR in #282
• BDRSPS-869 Implement Survey Site Visit Data RDF mapping by @Lincoln-GR in #280
• BDRSPS-848 Register survey site visit data template by @Lincoln-GR in #283
• BDRSPS-672 Add documentation for the template schema.json schema by @joecrowleygaia in #284
• [BDRSPS-956] Tweaked template status - current -> beta and deprecated… by @chungvl in #285
• Dependency upgrades by @Lincoln-GR in #261
• BDRSPS-953 Added chained inclusion check to siteVisitID and siteID for the survey occurrence v2 template. by @joecrowleygaia in #286
• BDRSPS-925 Implement Attribute Collections for Survey metadata v2 mapping by @Lincoln-GR in #287
• BDRSPS-954 Created siteVisitID -> siteID map extraction method for the survey site visit template. by @joecrowleygaia in #288
• BDRSPS-955 Added siteVisitID -> siteID lookup check for the survey occurrence template by @joecrowleygaia in #289
• BDRSPS-925 Implement collections for remaining attributes in incidental v3 mapping by @Lincoln-GR in #292
• BDRSPS-925 Implement collections for remaining attributes in Survey occurrence v2 template by @Lincoln-GR in #294
• BDRSPS-951 Updated the mapping for attributes for the plan node of the metadata template. by @joecrowleygaia in #295
• BDRSPS-925 Add collection for sensitivityCategory attribute by @Lincoln-GR in #296
• Add script for re-generating example ttl files by @Lincoln-GR in #297
• BDRSPS-969 Changes to survey occurrence v2 template fields by @Lincoln-GR in #299
• BDRSPS-968 Add eventDateStart and eventDateEnd to incidental v3 template by @Lincoln-GR in #298
• [BDRSPS-961] Updated biodiversity_type for systematic occurance templates by @chungvl in #291
• BDRSPS-860 Survey site visit data template instructions by @Lincoln-GR in #293
• BDRSPS-967 Corrections to survey metadata v2 mapping by @Lincoln-GR in #301
• [BDRSPS-918] First stab adding coordinateUncertaintyInMeters by @chungvl in #290
• BDRSPS-971 Various updates to template instructions by @Lincoln-GR in #303
• BDRSPS-940 Adding dwc:Occurrence and abis:BiodiversityRecord nodes to occurrence graphs by @joecrowleygaia in #305
• BDRSPS-947: set package version to 5.0.0-rc1 in prevision of new Tag & Release by @serge-gaia in #302

Full Changelog: v4.3.0...v5.0.0-rc1

v4.3.0

What's Changed

• BDRSPS-863 Modified serialization of url field to be string and not AnyUrl for fields model. by @joecrowleygaia in #216
• BDRSPS-823 Integrate docs TOC into nav section to free up horizontal space for tables by @Lincoln-GR in #217
• BDRSPS-827 modified the test case logic to only include templates that are formally registered by @joecrowleygaia in #218
• BDRSPS-812 changed all necessary references from conservation jurisdiction to authority by @joecrowleygaia in #219
• BDRSPS-852 Add more tests for new template validation by @Lincoln-GR in #220
• BDRSPS-853 Update site data v2 csv validation by @Lincoln-GR in #221
• Swap to ruff for linting by @Lincoln-GR in #222
• Bdrsps 870 - Incidental v3 template instructions preparations by @joecrowleygaia in #223
• Ruff format by @Lincoln-GR in #224
• BDRSPS-870 modified entrypoint to remove created output files in the event someone incorrectly specifies an instruction template to be generated that fails. by @joecrowleygaia in #225
• BDRSPS-877 Added poe the poet and removed unused scripts. by @joecrowleygaia in #227
• Setup directory for archiving documentation of removed templates by @Lincoln-GR in #229
• [BDRSPS-876] Updated description fields for acceptedNameUsage by @chungvl in #226
• BDRSPS-857 Schema update for site visist data template v2 by @Lincoln-GR in #228
• BDRSPS-870: Fixed dot point typo. by @joecrowleygaia in #231
• Move poe to dev dependencies by @Lincoln-GR in #232
• Set generate_instructions.sh script to exit if any build commands exit with error by @Lincoln-GR in #233
• Lint unused suppressions 2 by @joecrowleygaia in #235
• BDRSPS-832 Registering new incidental mapper v3. by @joecrowleygaia in #236
• Bdrsps 833: Added incidental occurrence v3 to generated instructions by @joecrowleygaia in #237
• BDRSPS-764 Add template changelogs by @Lincoln-GR in #238
• BDRSPS-859 Prepare survey site v2 documentation by @Lincoln-GR in #240
• BDRSPS-764 Survey metadata v2 changelog by @Lincoln-GR in #239
• BDRSPS-845 Updated survey occurrence v2 rdf mapping as required. by @joecrowleygaia in #241
• BDRSPS-764 Add remaining changelog entries for survey v2 templates by @Lincoln-GR in #243
• BDRSPS-841 Added survey occurrence v2 to registered templates. by @joecrowleygaia in #244
• BDRSPS-846 and BDRSPS-858 Register Survey metadata v2 by @Lincoln-GR in #246
• BDRSPS-842 Added survey occurrence v2 instructions context and generation to script by @joecrowleygaia in #247
• Bdrsps 878: Added incidental occurrence v1 page to archived_templates by @joecrowleygaia in #230
• Delete docs/pages/archived by @Lincoln-GR in #249
• BDRSPS-880 Clarify changelog entry for conservationAuthority by @Lincoln-GR in #248
• BDRSPS-874 Replaced tern:RDFDataset with tern:Dataset, defined within the base mapper by @joecrowleygaia in #250
• BDRSPS-884 Changed schema:isMemberOf to schema:memberOf. by @joecrowleygaia in #253
• BDRSPS-875 Updated all dcterms namespaced iris to sdo equivalent for current templates and associated shared code. by @joecrowleygaia in #252
• BDRSPS-883 Added specific implementation for the occurrence field tablers to include vocab links to the threatStatus table by @joecrowleygaia in #251
• BDRSPS-838: bumped version to 4.3.0. by @serge-gaia in #254

Full Changelog: v4.2.3...v4.3.0

v4.2.3

What's Changed

• BDRSPS-737 Made mapping changes to the newest occurrence templates by @joecrowleygaia in #195
• BDRSPS-737 Added shacl files and validation tests for datatypes changes. by @joecrowleygaia in #196
• BDRSPS-779 Added basic files for the site visit template. by @joecrowleygaia in #198
• BDRSPS-786 Changed name of markdown files generated for instructions. by @joecrowleygaia in #199
• BDRSPS-802: Added status field to metadata to indicate template stage in its lifecycle. by @joecrowleygaia in #201
• BDRSPS-787 Removed instructions method from mapper and removed instructions pdf files for new draft templates. by @joecrowleygaia in #202
• BDRSPS-787 Reverting instructions functionality for the incidental occurrence v1 template by @joecrowleygaia in #203
• BDRSPS-802 Revert "added status field to metadata to indicate template stage in its lifecycle." by @joecrowleygaia in #204
• BDRSPS-808 Modified the incidental_occurrence_data-v1.0.0.csv metadata method to return different url than standard calculated result by @joecrowleygaia in #205
• BDRSPS-780 Implemented schema.json and new mutual inclusion check for sensitivity cat and authority by @joecrowleygaia in #206
• BDRSPS-788 Implement schema changes for Incidental template v3 by @Lincoln-GR in #207
• BDRSPS-813 Incidental V3: Rename conservationJurisdiction to conservationAuthority in RDF output by @Lincoln-GR in #208
• BDRSPS-803 Map incidental template v3 new fields by @Lincoln-GR in #209
• BDRSPS-781 Changes to survey metadata template for v2 by @Lincoln-GR in #210
• BDRSPS-782 Schema changes for survey site data v2 by @Lincoln-GR in #211
• BDRSPS-820 Update providerRecordIDSource description in new templates by @Lincoln-GR in #212
• BDRSPS-811 Mutual exclusion check for siteID and siteVisitID by @Lincoln-GR in #213
• BDRSPS-797 Add siteVisitID extractor method by @Lincoln-GR in #214
• BDRSPS-815: bumped version to 4.2.3. by @serge-gaia in #215

Full Changelog: v4.2.2...v4.2.3

v4.2.2

What's Changed

• BDRSPS-766 Make frictionless assume every csv input is utf-8 encoded by @Lincoln-GR in #179
• BDRSPS-715 Proofreading of instructions documentation template by @chungvl in #180
• BDRSPS-736 Fixes minor issues with appendix heading formatting. by @joecrowleygaia in #182
• BDRSPS-721 Versioning of instructions by @joecrowleygaia in #181
• BDRSPS-736 Fixed bad anchor refs by @joecrowleygaia in #184
• BDRSPS-783 Documentation CI changes by @Lincoln-GR in #183
• BDRSPS-415b: Documentation proofreading by @chungvl in #186
• BDRSPS-712 Adds Darwin core links to field names in markdown tables by @joecrowleygaia in #187
• BDRSPS-772 Defining settings using pydantic_settings model. Created metadata model. by @joecrowleygaia in #189
• BDRSPS-783 Add CI to run flake8, mypy and pytest by @Lincoln-GR in #188
• BDRSPS-762 Create initial version of incidental template v3 by @Lincoln-GR in #185
• BDRSPS-763 Set up intial survey templates v2 by @Lincoln-GR in #190
• BDRSPS-768 Added test for the build_instructions function to ensure coverage. by @joecrowleygaia in #191
• BDRSPS-767 Created redirect logic html page to goto chosen template instructions page. by @joecrowleygaia in #192
• BDRSPS-785 Hide new templates during tests by @joecrowleygaia in #193

Full Changelog: v4.2.1...v4.2.2

v4.2.1

What's Changed

• BDRSPS-684 Run tests on python 3.12 by @Lincoln-GR in #177
• BDRSPS-741: bumped version to 4.2.1. by @serge-gaia in #178

New Contributors

• @Lincoln-GR made their first contribution in #177

Full Changelog: v4.2.0...v4.2.1

v4.2.0

What's Changed

• BDRSPS-702 removed label duplication of threat status tables for the occurrence template instructions. by @joecrowleygaia in #174
• BDRSPS-732 Add versions to generated instructions by @joecrowleygaia in #175
• BDRSPS-722: bumped version to 4.2.0. by @serge-gaia in #176

Full Changelog: v4.1.2...v4.2.0

v4.1.2

What's Changed

• BDRSPS-698 Added anchors and links to generated instructions. by @joecrowleygaia in #164
• BDRSPS-706 Field sort order should be as per csv template for instructions by @joecrowleygaia in #165
• BDRSPS-701 Fixed pipeline issues by @joecrowleygaia in #163
• BDRSPS-657 Mappers now rely upon field schemas for controlled vocabs by @joecrowleygaia in #166
• BDRSPS-703 Remove kingdom attribute from templates by @joecrowleygaia in #167
• BDRSPS-556 Created survey occurrence instructions markdown template by @joecrowleygaia in #168
• BDRSPS-557 Create survey metadata instructions by @joecrowleygaia in #169
• BDRSPS-703 Modified Kingdom Specimen and Occurrence vocab mappings by @joecrowleygaia in #170
• BDRSPS-703 Altered the descriptions of the kingdom occurrence and specimen vocabs. by @joecrowleygaia in #171
• BDRSPS-558 Added the survey site data instructions template and generating logic by @joecrowleygaia in #172
• bumped version to 4.1.2. by @serge-gaia in #173

Full Changelog: v4.1.1...v4.1.2

v4.1.1

Version set to match BDR application version

What's Changed

• BDRSPS-531 Schema CSV CLI tool by @joecrowleygaia in #149
• BDRSPS-651 Added Vocabulary base class by @joecrowleygaia in #152
• BDRSPS-654 Added vocabs to schema.json by @joecrowleygaia in #153
• BDRSPS-566 Added new test to check blank template header label errors by @joecrowleygaia in #154
• BDRSPS-654 Removed get_vocab() base mapper method. by @joecrowleygaia in #155
• BDRSPS-646: Added vocab table generation tool by @joecrowleygaia in #156
• BDRSPS-689 Changed default CRS to GDA2020 by @joecrowleygaia in #157
• BDRSPS-555 First draft of incidental occurrence instructions by @joecrowleygaia in #158
• BDRSPS-692 Create threatStatus table generator by @joecrowleygaia in #159
• BDRSPS-697 Added mkdocs-material and github actions for publishing instructions. by @joecrowleygaia in #160
• BDRSPS-701 Modified occurrence mappers, moving qualifiedValues to meet specification by @joecrowleygaia in #161
• bumped version to 4.1.1 to match a BDR partA new release. by @serge-gaia in #162

Full Changelog: v4.0.0...v4.1.1

v4.0.0

What's Changed

• BDRSPS-589: renamed fields visitOrganisations and surveyOrganisation to visitOrgs and surveyOrgs respectively. by @joecrowleygaia in #146
• BDRSPS-624: Added GeometryError and capturing during extraction of default geometries from site template. by @joecrowleygaia in #147
• BDRSPS-608 Updated ssd site instructions. by @joecrowleygaia in #148
• BDRSPS-436 bumped version to v4.0.0 by @serge-gaia in #150
• BDRSPS-608 Updated ssd metadata instructions by @joecrowleygaia in #151

Full Changelog: v4.0.0-rc3...v4.0.0