Skip to content

Issues: gagneurlab/FRASER

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

28 Open 23 Closed
28 Open 23 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Using FRASER on sample subsets to calculate p-value
#93 opened Oct 24, 2024 by irikas
1
Multi-mapping reads filtering support in countNonSplicedReads
#91 opened Oct 5, 2024 by mincej
how does FRASER compare to SpliSER?
#90 opened Aug 10, 2024 by MiqG
3
FRASER 2.0 versions not available
#87 opened Jun 12, 2024 by Wynandi
2
Fix README after moving to gagneurlab
#73 opened Apr 25, 2024 by c-mertes
@c-mertes
Error: useNames = NA is defunct
#77 opened Dec 29, 2023 by deb0612
3
Incompatibility of fds objects between versions
#59 opened Dec 1, 2023 by adelpozomt
1
Could not find read type: jaccard
#78 opened Jul 11, 2023 by jialanm
3
Merging Multiple Samples
#56 opened Jun 9, 2023 by GuoLabUCSD
1
Error in predictYCpp(as.matrix(H), D, b) : Mat::init(): requested size is too large; suggest to enable ARMA_64BIT_WORD
#55 opened Apr 11, 2023 by Vinniporiya
FRASER with non model organisms
#51 opened Mar 1, 2023 by amitjavilaventura
FRASER Resources and Run Time
#49 opened Feb 3, 2023 by lemdcock
FRASER Error in check_returned_array
#48 opened Feb 3, 2023 by lemdcock
A question about resultsByGenes
#46 opened Nov 23, 2022 by ym-chen
ERROR: Paired-end reads were detected in single-end read library
#45 opened Oct 27, 2022 by deb0612
Error in working directory
#44 opened Sep 16, 2022 by lyj95618
Getting error when counting splice sites
#79 opened Aug 29, 2022 by fburdet
3
Error in H5Fcreate(file) : HDF5. File accessibilty. Unable to open file.
#40 opened Jun 10, 2022 by ritetsu
"Please provide hgnc symbols to compute gene p values!" error
#39 opened Jun 6, 2022 by bw2
1
annotateRangesWithTxDb function error
#38 opened Apr 29, 2022 by ChoiJi-Hye
1
crash if run on large number of samples
#80 opened Mar 17, 2022 by dkhalenkw
filter out reads with MAPQ=0 & duplicated reads
#32 opened Feb 14, 2022 by yangyangzijiajia
Remove group and condition from the code/vignette as it is not used within FRASER
#31 opened Jan 25, 2022 by c-mertes
FRASER maxing out memory on sge cluster
#29 opened Sep 24, 2021 by Jessen-Erik
3
Question about using the mergeCounts function
#25 opened Mar 17, 2021 by lyj95618
ProTip! Follow long discussions with comments:>50.