Bump ISMRMRD dependency

gadgetron · Nov 25, 2024 · c0baaa8 · c0baaa8
1 parent c3490ba
commit c0baaa8
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Showing 3 changed files with 16 additions and 7 deletions.
diff --git a/.github/workflows/pingvin-ci.yml b/.github/workflows/pingvin-ci.yml
@@ -97,6 +97,15 @@ jobs:
       - name: checkout
         uses: actions/[email protected]
 
+      - name: Install Yardl
+        run: |-
+          YARDL_VERSION=$(grep -Po '(?<=YARDL_VERSION=)(.+)' Dockerfile)
+          mkdir -p "/tmp/yardl_${YARDL_VERSION}_linux_x86_64"
+          cd "/tmp/yardl_${YARDL_VERSION}_linux_x86_64"
+          wget --quiet "https://github.com/microsoft/yardl/releases/download/v${YARDL_VERSION}/yardl_${YARDL_VERSION}_linux_x86_64.tar.gz"
+          tar -xzf "yardl_${YARDL_VERSION}_linux_x86_64.tar.gz"
+          pwd >> $GITHUB_PATH
+
       - name: Setup Miniforge
         uses: conda-incubator/setup-miniconda@v3
         with:

diff --git a/conda/meta.yaml b/conda/meta.yaml
@@ -28,7 +28,7 @@ requirements:
     - hdf5=1.10.6
     - howardhinnant_date=3.0.1
     - imagemagick=7.0.11_13                   # dev
-    - ismrmrd=1.14.1
+    - ismrmrd=1.14.2
     - ismrmrd-python=1.14.0
     - just=1.31.0                             # dev
     - libblas=*=*mkl
@@ -57,14 +57,14 @@ requirements:
     - fftw=3.3.9
     - h5py=3.7.0
     - hdf5=1.10.6
-    - ismrmrd=1.14.1
+    - ismrmrd=1.14.2
     - ismrmrd-python=1.14.0
     - jq=1.7.1
     - libblas=*=*mkl
     - libcurl=7.86.0
     - libxml2=2.9.14
     - mkl>=2024.1.0
-    - mrd-python=2.1.0
+    - mrd-python=2.1.1
     - numpy=1.26.4
     - onnxruntime=1.18.1
     - pugixml=1.12.1

diff --git a/environment.yml b/environment.yml
@@ -39,7 +39,7 @@ dependencies:
   - hdf5=1.10.6
   - howardhinnant_date=3.0.1                # dev
   - imagemagick=7.0.11_13                   # dev
-  - ismrmrd=1.14.1
+  - ismrmrd=1.14.2
   - ismrmrd-python=1.14.0
   - junitparser=3.1.2
   - jupyter=1.0.0                           # dev
@@ -52,8 +52,8 @@ dependencies:
   - matplotlib=3.8.4                        # dev
   - mkl>=2024.1.0
   - mkl-include>=2024.1.0                   # dev
-  - mrd=2.1.0
-  - mrd-python=2.1.0
+  - mrd=2.1.1
+  - mrd-python=2.1.1
   - ninja=1.12.1                            # dev
   - nlohmann_json=3.11.3                    # dev
   - numpy=1.26.4
@@ -70,7 +70,7 @@ dependencies:
   - recommonmark=0.7.1                      # dev
   - scipy=1.13.1
   - shellcheck=0.10.0                       # dev
-  - siemens_to_ismrmrd=1.2.12
+  - siemens_to_ismrmrd=1.2.13
   - sphinx=4.4.0                            # dev
   - sphinx_rtd_theme=1.3.0                  # dev
   - sysroot_linux-64=2.12