chore: update type annotations for 3.10-12

src/ga4gh/vrs/extras/vcf_annotation.py

@@ -7,7 +7,6 @@
 import logging
 import pickle
 from enum import Enum
-from typing import Dict, List, Optional
 from timeit import default_timer as timer
 
 import click
@@ -110,7 +109,7 @@ class SeqRepoProxyType(str, Enum):
     help="Require validation checks to pass in order to return a VRS object"
 )
 def annotate_click(  # pylint: disable=too-many-arguments
-    vcf_in: str, vcf_out: Optional[str], vrs_pickle_out: Optional[str],
+    vcf_in: str, vcf_out: str | None, vrs_pickle_out: str | None,
     vrs_attributes: bool, seqrepo_dp_type: SeqRepoProxyType, seqrepo_root_dir: str,
     seqrepo_base_url: str, assembly: str, skip_ref: bool, require_validation: bool
 ) -> None:
@@ -175,8 +174,8 @@ def __init__(self, seqrepo_dp_type: SeqRepoProxyType = SeqRepoProxyType.LOCAL,
 
     @use_ga4gh_compute_identifier_when(VrsObjectIdentifierIs.MISSING)
     def annotate(  # pylint: disable=too-many-arguments,too-many-locals
-        self, vcf_in: str, vcf_out: Optional[str] = None,
-        vrs_pickle_out: Optional[str] = None, vrs_attributes: bool = False,
+        self, vcf_in: str, vcf_out: str | None = None,
+        vrs_pickle_out: str | None = None, vrs_attributes: bool = False,
         assembly: str = "GRCh38", compute_for_ref: bool = True,
         require_validation: bool = True
     ) -> None:
@@ -273,8 +272,8 @@ def annotate(  # pylint: disable=too-many-arguments,too-many-locals
                 pickle.dump(vrs_data, wf)
 
     def _get_vrs_object(  # pylint: disable=too-many-arguments,too-many-locals
-        self, vcf_coords: str, vrs_data: Dict, vrs_field_data: Dict, assembly: str,
-        vrs_data_key: Optional[str] = None, output_pickle: bool = True,
+        self, vcf_coords: str, vrs_data: dict, vrs_field_data: dict, assembly: str,
+        vrs_data_key: str | None = None, output_pickle: bool = True,
         output_vcf: bool = False, vrs_attributes: bool = False,
         require_validation: bool = True
     ) -> None:
@@ -352,11 +351,11 @@ def _get_vrs_object(  # pylint: disable=too-many-arguments,too-many-locals
                 vrs_field_data[self.VRS_STATES_FIELD].append(alt)
 
     def _get_vrs_data(  # pylint: disable=too-many-arguments,too-many-locals
-        self, record: pysam.VariantRecord, vrs_data: Dict, assembly: str,  # pylint: disable=no-member
-        additional_info_fields: List[str], vrs_attributes: bool = False,
+        self, record: pysam.VariantRecord, vrs_data: dict, assembly: str,  # pylint: disable=no-member
+        additional_info_fields: list[str], vrs_attributes: bool = False,
         output_pickle: bool = True, output_vcf: bool = True,
         compute_for_ref: bool = True, require_validation: bool = True
-    ) -> Dict:
+    ) -> dict:
         """Get VRS data for record's reference and alt alleles.
 
         :param pysam.VariantRecord record: A row in the VCF file