STATA pull archive

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Vlad Drobinin edited this page Jun 10, 2021 · 1 revision

STATA Pull

Steps for the stata pull in order to generate scannedvars.csv. Quite dated but might be useful for reference one day

Dependencies for running the pull script:

scid folder on local disk / relative path
cantab files cgt.dta
- note, so a 3rd script is needed crcantab.do
  - along with accompanying cantab[date].xlsx file
PLE spreadsheet
scanned ids (now includes all)
any additional custom functions or packages have been installed if setting up on new computer

Pull FORBOW data

run pull-forbow-files-[date].do

modify dates and paths in the script as needed

run crcantab.do

making sure the right cantab[date].xlsx is in the folder

run cr-forbow-[date].do
When successful copy the generated scannedvars-[date].csv to S:\FORBOW\NEURO\behavioural_data
Update the 'WeeklySend-NeuroLog' in the 'behavioural_data' folder
Copy the neuro output from PBIL to this directory as well