Cleanup #170

	# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Inferelator-Prior CI

	on: [push, pull_request]

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	fail-fast: false

	steps:
	- uses: actions/checkout@v2
	- name: Set up Conda
	uses: conda-incubator/setup-miniconda@v2
	with:
	environment-file: test-environment.yml
	activate-environment: test_inferelator_prior
	auto-activate-base: false
	- name: Conda Info
	shell: bash -l {0}
	run: \|
	conda info
	conda list
	conda env list
	- name: Install dependencies
	shell: bash -l {0}
	run: \|
	python -m pip install --upgrade pip wheel
	python -m pip install Cython --install-option="--no-cython-compile"
	python -m pip install coverage pytest
	python -m pip install numpy matplotlib pysam
	python -m pip install -r requirements.txt
	- name: Test with pytest & coverage
	shell: bash -l {0}
	run: \|
	python -m coverage run -m pytest
	python -m coverage xml
	- name: Upload Coverage to Codecov
	uses: codecov/codecov-action@v2

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