Project repository for Bioinformatics course held at Faculty of Electrical Engineering and Computing, University of Zagreb.
Construction of binary wavelet tree using RRR structure.
- Jure Čular, 0036479001
- Bartol Freškura, 0036480392
- Filip Gulan, 0036479428
- doc directory contains the project documentation sources. Check documentation.pdf file for more details about the project and measurement results
- src directory contains C++ source code of the project
- tests directory contains unit tests and measurements tests
- Branch feature/packing-unpacking-sequence contains coded RRR sequence as described in documentation
- Position working directory in the root folder of project.
- Run commands:
This command will compile the project to a
$ cmake CMakeLists.txt $ cmake --build ./ --target bioinformatics_project
bioinformatics_project
executable file in the root folder of project.
Program expects 3 arguments:
- filename of the sequence in FASTA format
- filename of the commands file to be executed
- filename of the output file.
For running given example:
$ ./bioinformatics_project example/ecoli_seq.txt example/ecoli_commands.txt example/ecoli_outs.txt > example/ecoli_stats.txt