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Split extra dependencies and dependency groups (#1238) #2388

Split extra dependencies and dependency groups (#1238)

Split extra dependencies and dependency groups (#1238) #2388

Workflow file for this run

name: Tests
on:
push:
branches:
- main
pull_request:
schedule:
- cron: "0 4 * * *"
env:
FORCE_COLOR: 1
jobs:
pytest:
name: Unit tests
strategy:
matrix:
os: [
ubuntu-latest,
macos-latest,
windows-latest,
]
python: [
'3.9',
'3.10',
'3.11',
'3.12',
]
fail-fast: false
runs-on: ${{ matrix.os }}
env:
OS: ${{ matrix.os }}
steps:
- name: Checkout repository
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Install the latest version of uv
uses: astral-sh/setup-uv@v4
with:
enable-cache: true
cache-dependency-glob: "pyproject.toml"
github-token: ${{ secrets.GITHUB_TOKEN }}
- name: Install Python
run: uv python install ${{ matrix.python }}
- name: Install tox
run: uv tool install tox --with tox-uv
- name: Add local bin to path on Windows
if: runner.os == 'Windows'
run: echo "C:/Users/runneradmin/.local/bin" >> $GITHUB_PATH
shell: bash
- name: Setup test suite
run: tox run -v --notest --skip-missing-interpreters false -e ${{ matrix.python }}
# Run all tests on schedule, but only non-slow tests on push
- name: Run pytest
run: |
if [ "${{ github.event_name }}" == "schedule" ]; then
tox -e pytest
else
tox -e pytest -- -m "not slow"
fi
shell: bash # this wouldn't work on Powershell
- name: Upload coverage reports to Codecov
if: ${{ matrix.os == 'ubuntu-latest' && matrix.python == '3.12' }}
uses: codecov/[email protected]
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
cli:
name: CLI smoke tests
runs-on: ubuntu-latest
env:
PYTHON_VERSION: '3.12'
steps:
- name: Checkout repository
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Install the latest version of uv
uses: astral-sh/setup-uv@v4
with:
enable-cache: true
cache-dependency-glob: "pyproject.toml"
github-token: ${{ secrets.GITHUB_TOKEN }}
- name: Install Python
run: uv python install ${{ env.PYTHON_VERSION }}
- name: Install CLI tools
run: uv tool install "torchio@."
- name: Test transforms CLI tool
run: tiotr --help
- name: Test info CLI tool
run: tiohd --help