Process completed with exit code 1.

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, actions/cache@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

dependency ‘geneLenDataBase’ is not available

unable to access index for repository https://www.bioconductor.org/packages/3.21/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/books/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:

Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]

Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]

Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]

Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]

Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:

cairo 1.18.2 is already installed and up-to-date. To reinstall 1.18.2, run: brew reinstall cairo

macOS's Gatekeeper has been disabled for this Cask

harfbuzz 10.0.1_1 is already installed and up-to-date. To reinstall 10.0.1_1, run: brew reinstall harfbuzz

fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi