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SMALR v1.1

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@jbeaulaurier jbeaulaurier released this 26 Feb 21:50
· 5 commits to master since this release

Changes

  • Added support for current PacBio BAM format of alignments (legacy *.cmp.h5 still supported)
  • Moved documentation to readthedocs
  • Improved installation procedure by bundling installation of Python dependencies
  • Deprecated the --align option due to limited use-cases and limited support with aligned BAM inputs
  • Cleaned up codebase

Citation

John Beaulaurier, Xue-Song Zhang, Shijia Zhu, Robert Sebra, Chaggai Rosenbluh, Gintaras Deikus, Nan Shen, Diana Munera, Matthew K. Waldor, Andrew Chess, Martin J. Blaser, Eric E. Schadt & Gang Fang. Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes. Nat. Commun. 6, 7438 (2015).