Merge pull request #7 from epijim/add-cicd

fixed cicd

.github/workflows/docs.yml

@@ -0,0 +1,13 @@
+name: Docs 📚
+
+on:
+  push:
+    branches:
+      - main
+
+jobs:
+  docs:
+    name: Pkgdown Docs 📚
+    uses: phuse-org/devops-toolkit/.github/workflows/pkgdown.yml@main
+    secrets:
+      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}

.github/workflows/phuse-cicd.yml

@@ -16,6 +16,12 @@ on:
   workflow_dispatch:
 
 jobs:
+  check:
+    name: Check
+    uses: phuse-org/devops-toolkit/.github/workflows/R-CMD-check.yml@main
+  coverage:
+    name: Code Coverage
+    uses: phuse-org/devops-toolkit/.github/workflows/test-coverage.yml@main
   links:
     name: Links
-    uses: phuse-org/devops-toolkit/.github/workflows/R-CMD-check.yml@main
+    uses: phuse-org/devops-toolkit/.github/workflows/urlchecker.yml@main

DESCRIPTION

@@ -11,7 +11,7 @@ Authors@R: c(
 Maintainer: James Black <[email protected]>
 Description: A collection of R functions supporting the text book
   Modern Epidemiology, Second Edition, by Kenneth J.Rothman and Sander Greenland.
-  ISBN 13: 978-0781755641  See <http://www.krothman.org/> for more information.
+  ISBN 13: 978-0781755641 
 License: GPL (>= 2)
 URL: https://github.com/epijim/episheet
 BugReports: https://github.com/epijim/episheet/issues

README.md

@@ -29,7 +29,7 @@ This package is functions to support the text book
 
 > Modern Epidemiology, Second Edition, by Kenneth J. Rothman and Sander Greenland.
 
-Textbook website: [krothman.org](http://krothman.org/)
+Textbook website was hosted at krothman.org, but it appears that site is now down.
 
 ## Functions
 
@@ -45,7 +45,6 @@ Textbook website: [krothman.org](http://krothman.org/)
 * Quickcalc				
 * P-Value Functions
     + `pvalueplot` Plot a p-value function
-    + [Example of use](https://cran.r-project.org/web/packages/episheet/vignettes/pvalueplot.html)
 * Standardization				
 * Seasonal Analysis				
 * Meta-Analysis (contributed by T. Andersson & A. Ahlbom)						
@@ -54,4 +53,4 @@ Textbook website: [krothman.org](http://krothman.org/)
 
 ## Complete excel tool
 
-This package currently contains functions for calculating rate ratios and differences, risk ratios and differences, Mantel Haenzsel risk ratio. The complete set is available via the excel tool [episheet](http://krothman.org/Episheet.xls).
+This package currently contains functions for calculating rate ratios and differences, risk ratios and differences, Mantel Haenzsel risk ratio. The complete set was available via the excel tool episheet, but Rothman's website hosting it appears now to be down.