Merge pull request #36 from egouldo/rerun-targets

Ensure inverse weights applied #35
egouldo · May 24, 2024 · 690696f · 690696f
2 parents 2f6a850 + cf4b2a3
commit 690696f
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Showing 8 changed files with 749 additions and 749 deletions.
diff --git a/R/fit_boxcox_ratings_cat.R b/R/fit_boxcox_ratings_cat.R
@@ -42,8 +42,8 @@ fit_boxcox_ratings_cat <- function(.data, outcome, outcome_var, interceptless =
                                    (1 | ReviewerId) # + (1 | study_id ) RE ommitted due to convergence issues
                             ))
     mod <- lme4::lmer(f,
-                      data = data_tbl #,
-                      #weights = I(1/pull(data_tbl,{{outcome_var}}))
+                      data = data_tbl ,
+                      weights = I(1/pull(data_tbl,{{outcome_var}}))
                       )
   }else(#interceptless: for plotting
     mod <- lme4::lmer(rlang::new_formula(rlang::ensym(outcome), 

diff --git a/_targets.R b/_targets.R
@@ -29,7 +29,7 @@ tar_option_set(
   packages = pkgs,
   imports = "ManyEcoEvo",
   # debug = c("augmented_data_3efd9941")#, #augmented_data_a4d78efa
-  # cue = tar_cue(mode = "never") #because we have silent errors!
+  cue = tar_cue(mode = "always") #because we have silent errors!
 )
 
 list(tarchetypes::tar_file_read(name = euc_reviews, 

diff --git a/_targets/meta/meta b/_targets/meta/meta
diff --git a/data-raw/tar_make.R b/data-raw/tar_make.R
@@ -4,7 +4,7 @@ library(targets)
 library(usethis)
 
 # ---- Run targets pipeline ----
-# tar_destroy() # Uncomment and run if want to reproduce from scratch, run locally only
+tar_destroy() # Uncomment and run if want to reproduce from scratch, run locally only
 tar_make()
 
 # ---- Read targets and use data ----

diff --git a/data/ManyEcoEvo_results.rda b/data/ManyEcoEvo_results.rda
diff --git a/data/ManyEcoEvo_viz.rda b/data/ManyEcoEvo_viz.rda
diff --git a/data/ManyEcoEvo_yi_results.rda b/data/ManyEcoEvo_yi_results.rda
diff --git a/data/ManyEcoEvo_yi_viz.rda b/data/ManyEcoEvo_yi_viz.rda