Release notes for 2.5.8 and API propagated.

appli/__init__.py

@@ -395,18 +395,26 @@ def JinjaGetManagerList(sujet=""):
     return " ".join(["<li><a href='mailto:{1}{0}'>{2} ({1})</a></li> ".format(sujet, *r) for r in LstUsers])
 
 
-ecotaxa_version = "2.5.7"
+ecotaxa_version = "2.5.8"
 
 
 def JinjaGetEcotaxaVersionText():
-    return ecotaxa_version + " 2021-05-05"
+    return ecotaxa_version + " 2021-05-26"
 
 
 app.jinja_env.filters['datetime'] = JinjaFormatDateTime
 app.jinja_env.filters['nl2br'] = JinjaNl2BR
 app.jinja_env.globals.update(GetManagerList=JinjaGetManagerList, GetEcotaxaVersionText=JinjaGetEcotaxaVersionText)
 
 """Changelog
+2021-05-26 : V 2.5.8
+    Feature #360: Allow to subset by sampling various entities, not only categories.
+    Bug #595: Project managers should be able to clone their own projects, even if they are not Project Creator.
+    Bug #543: A corrupted PNG could make an import operation fail with a cryptic error.
+    Feature #590: Move file navigation to back-end.
+    Features #673, #672: Add/adapt API entry points for new front-end. @See #382
+    Bug #614: Api could not be used interactively from /api/docs generated page.
+    Bug #657: A TIFF file could crash the import. 
 2021-05-05 : V 2.5.7
     Feature #660: Add a column to Collection and expose a search API entry point using it.
     Bug #659: In a mirrored DB setup, project creation is sometime not visible immediately.

to_back/ecotaxa_cli_py/__init__.py

@@ -7,7 +7,7 @@
 
     No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator)  # noqa: E501
 
-    The version of the OpenAPI document: 0.0.9
+    The version of the OpenAPI document: 0.0.13
     Generated by: https://openapi-generator.tech
 """
 
@@ -43,21 +43,29 @@
 from to_back.ecotaxa_cli_py.exceptions import ApiException
 # import models into sdk package
 from to_back.ecotaxa_cli_py.models.acquisition_model import AcquisitionModel
+from to_back.ecotaxa_cli_py.models.body_export_object_set_object_set_export_post import BodyExportObjectSetObjectSetExportPost
 from to_back.ecotaxa_cli_py.models.body_put_user_file_my_files_post import BodyPutUserFileMyFilesPost
 from to_back.ecotaxa_cli_py.models.bulk_update_req import BulkUpdateReq
 from to_back.ecotaxa_cli_py.models.classify_req import ClassifyReq
 from to_back.ecotaxa_cli_py.models.collection_model import CollectionModel
 from to_back.ecotaxa_cli_py.models.constants import Constants
 from to_back.ecotaxa_cli_py.models.create_collection_req import CreateCollectionReq
 from to_back.ecotaxa_cli_py.models.create_project_req import CreateProjectReq
+from to_back.ecotaxa_cli_py.models.directory_entry_model import DirectoryEntryModel
+from to_back.ecotaxa_cli_py.models.directory_model import DirectoryModel
 from to_back.ecotaxa_cli_py.models.emo_dnet_export_rsp import EMODnetExportRsp
+from to_back.ecotaxa_cli_py.models.export_req import ExportReq
+from to_back.ecotaxa_cli_py.models.export_rsp import ExportRsp
+from to_back.ecotaxa_cli_py.models.export_type_enum import ExportTypeEnum
+from to_back.ecotaxa_cli_py.models.group_definitions import GroupDefinitions
 from to_back.ecotaxa_cli_py.models.http_validation_error import HTTPValidationError
 from to_back.ecotaxa_cli_py.models.historical_classification import HistoricalClassification
 from to_back.ecotaxa_cli_py.models.historical_last_classif import HistoricalLastClassif
 from to_back.ecotaxa_cli_py.models.image_model import ImageModel
 from to_back.ecotaxa_cli_py.models.import_req import ImportReq
 from to_back.ecotaxa_cli_py.models.import_rsp import ImportRsp
 from to_back.ecotaxa_cli_py.models.job_model import JobModel
+from to_back.ecotaxa_cli_py.models.limit_methods import LimitMethods
 from to_back.ecotaxa_cli_py.models.login_req import LoginReq
 from to_back.ecotaxa_cli_py.models.merge_rsp import MergeRsp
 from to_back.ecotaxa_cli_py.models.minimal_user_bo import MinimalUserBO
@@ -73,13 +81,15 @@
 from to_back.ecotaxa_cli_py.models.project_taxo_stats_model import ProjectTaxoStatsModel
 from to_back.ecotaxa_cli_py.models.project_user_stats_model import ProjectUserStatsModel
 from to_back.ecotaxa_cli_py.models.sample_model import SampleModel
+from to_back.ecotaxa_cli_py.models.sample_taxo_stats_model import SampleTaxoStatsModel
 from to_back.ecotaxa_cli_py.models.simple_import_req import SimpleImportReq
 from to_back.ecotaxa_cli_py.models.simple_import_rsp import SimpleImportRsp
 from to_back.ecotaxa_cli_py.models.subset_req import SubsetReq
 from to_back.ecotaxa_cli_py.models.subset_rsp import SubsetRsp
 from to_back.ecotaxa_cli_py.models.taxa_search_rsp import TaxaSearchRsp
 from to_back.ecotaxa_cli_py.models.taxon_model import TaxonModel
 from to_back.ecotaxa_cli_py.models.taxonomy_tree_status import TaxonomyTreeStatus
+from to_back.ecotaxa_cli_py.models.user_activity import UserActivity
 from to_back.ecotaxa_cli_py.models.user_model import UserModel
 from to_back.ecotaxa_cli_py.models.user_model_with_rights import UserModelWithRights
 from to_back.ecotaxa_cli_py.models.validation_error import ValidationError

to_back/ecotaxa_cli_py/api/acquisitions_api.py

@@ -5,7 +5,7 @@
 
     No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator)  # noqa: E501
 
-    The version of the OpenAPI document: 0.0.9
+    The version of the OpenAPI document: 0.0.13
     Generated by: https://openapi-generator.tech
 """
 

to_back/ecotaxa_cli_py/api/authentification_api.py

@@ -5,7 +5,7 @@
 
     No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator)  # noqa: E501
 
-    The version of the OpenAPI document: 0.0.9
+    The version of the OpenAPI document: 0.0.13
     Generated by: https://openapi-generator.tech
 """
 

to_back/ecotaxa_cli_py/api/collections_api.py

@@ -5,7 +5,7 @@
 
     No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator)  # noqa: E501
 
-    The version of the OpenAPI document: 0.0.9
+    The version of the OpenAPI document: 0.0.13
     Generated by: https://openapi-generator.tech
 """
 

to_back/ecotaxa_cli_py/api/files_api.py

@@ -5,7 +5,7 @@
 
     No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator)  # noqa: E501
 
-    The version of the OpenAPI document: 0.0.9
+    The version of the OpenAPI document: 0.0.13
     Generated by: https://openapi-generator.tech
 """
 
@@ -36,6 +36,120 @@ def __init__(self, api_client=None):
             api_client = ApiClient()
         self.api_client = api_client
 
+    def list_common_files_common_files_get(self, path, **kwargs):  # noqa: E501
+        """List Common Files  # noqa: E501
+
+        List the common files which are usable for some file-related operations e.g. import.  # noqa: E501
+        This method makes a synchronous HTTP request by default. To make an
+        asynchronous HTTP request, please pass async_req=True
+        >>> thread = api.list_common_files_common_files_get(path, async_req=True)
+        >>> result = thread.get()
+
+        :param async_req bool: execute request asynchronously
+        :param str path: (required)
+        :param _preload_content: if False, the urllib3.HTTPResponse object will
+                                 be returned without reading/decoding response
+                                 data. Default is True.
+        :param _request_timeout: timeout setting for this request. If one
+                                 number provided, it will be total request
+                                 timeout. It can also be a pair (tuple) of
+                                 (connection, read) timeouts.
+        :return: DirectoryModel
+                 If the method is called asynchronously,
+                 returns the request thread.
+        """
+        kwargs['_return_http_data_only'] = True
+        return self.list_common_files_common_files_get_with_http_info(path, **kwargs)  # noqa: E501
+
+    def list_common_files_common_files_get_with_http_info(self, path, **kwargs):  # noqa: E501
+        """List Common Files  # noqa: E501
+
+        List the common files which are usable for some file-related operations e.g. import.  # noqa: E501
+        This method makes a synchronous HTTP request by default. To make an
+        asynchronous HTTP request, please pass async_req=True
+        >>> thread = api.list_common_files_common_files_get_with_http_info(path, async_req=True)
+        >>> result = thread.get()
+
+        :param async_req bool: execute request asynchronously
+        :param str path: (required)
+        :param _return_http_data_only: response data without head status code
+                                       and headers
+        :param _preload_content: if False, the urllib3.HTTPResponse object will
+                                 be returned without reading/decoding response
+                                 data. Default is True.
+        :param _request_timeout: timeout setting for this request. If one
+                                 number provided, it will be total request
+                                 timeout. It can also be a pair (tuple) of
+                                 (connection, read) timeouts.
+        :return: tuple(DirectoryModel, status_code(int), headers(HTTPHeaderDict))
+                 If the method is called asynchronously,
+                 returns the request thread.
+        """
+
+        local_var_params = locals()
+
+        all_params = [
+            'path'
+        ]
+        all_params.extend(
+            [
+                'async_req',
+                '_return_http_data_only',
+                '_preload_content',
+                '_request_timeout'
+            ]
+        )
+
+        for key, val in six.iteritems(local_var_params['kwargs']):
+            if key not in all_params:
+                raise ApiTypeError(
+                    "Got an unexpected keyword argument '%s'"
+                    " to method list_common_files_common_files_get" % key
+                )
+            local_var_params[key] = val
+        del local_var_params['kwargs']
+        # verify the required parameter 'path' is set
+        if self.api_client.client_side_validation and ('path' not in local_var_params or  # noqa: E501
+                                                        local_var_params['path'] is None):  # noqa: E501
+            raise ApiValueError("Missing the required parameter `path` when calling `list_common_files_common_files_get`")  # noqa: E501
+
+        collection_formats = {}
+
+        path_params = {}
+
+        query_params = []
+        if 'path' in local_var_params and local_var_params['path'] is not None:  # noqa: E501
+            query_params.append(('path', local_var_params['path']))  # noqa: E501
+
+        header_params = {}
+
+        form_params = []
+        local_var_files = {}
+
+        body_params = None
+        # HTTP header `Accept`
+        header_params['Accept'] = self.api_client.select_header_accept(
+            ['application/json'])  # noqa: E501
+
+        # Authentication setting
+        auth_settings = ['HTTPBearer']  # noqa: E501
+
+        return self.api_client.call_api(
+            '/common_files/', 'GET',
+            path_params,
+            query_params,
+            header_params,
+            body=body_params,
+            post_params=form_params,
+            files=local_var_files,
+            response_type='DirectoryModel',  # noqa: E501
+            auth_settings=auth_settings,
+            async_req=local_var_params.get('async_req'),
+            _return_http_data_only=local_var_params.get('_return_http_data_only'),  # noqa: E501
+            _preload_content=local_var_params.get('_preload_content', True),
+            _request_timeout=local_var_params.get('_request_timeout'),
+            collection_formats=collection_formats)
+
     def put_user_file_my_files_post(self, file, **kwargs):  # noqa: E501
         """Put User File  # noqa: E501
 

to_back/ecotaxa_cli_py/api/instrument_api.py

@@ -5,7 +5,7 @@
 
     No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator)  # noqa: E501
 
-    The version of the OpenAPI document: 0.0.9
+    The version of the OpenAPI document: 0.0.13
     Generated by: https://openapi-generator.tech
 """
 

to_back/ecotaxa_cli_py/api/jobs_api.py

@@ -5,7 +5,7 @@
 
     No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator)  # noqa: E501
 
-    The version of the OpenAPI document: 0.0.9
+    The version of the OpenAPI document: 0.0.13
     Generated by: https://openapi-generator.tech
 """
 
@@ -39,7 +39,7 @@ def __init__(self, api_client=None):
     def erase_job_jobs_job_id_delete(self, job_id, **kwargs):  # noqa: E501
         """Erase Job  # noqa: E501
 
-        Delete the task, from DB and with associated storage.  # noqa: E501
+        Delete the job, from DB and with associated storage. If the job is running then kill it.  # noqa: E501
         This method makes a synchronous HTTP request by default. To make an
         asynchronous HTTP request, please pass async_req=True
         >>> thread = api.erase_job_jobs_job_id_delete(job_id, async_req=True)
@@ -64,7 +64,7 @@ def erase_job_jobs_job_id_delete(self, job_id, **kwargs):  # noqa: E501
     def erase_job_jobs_job_id_delete_with_http_info(self, job_id, **kwargs):  # noqa: E501
         """Erase Job  # noqa: E501
 
-        Delete the task, from DB and with associated storage.  # noqa: E501
+        Delete the job, from DB and with associated storage. If the job is running then kill it.  # noqa: E501
         This method makes a synchronous HTTP request by default. To make an
         asynchronous HTTP request, please pass async_req=True
         >>> thread = api.erase_job_jobs_job_id_delete_with_http_info(job_id, async_req=True)

to_back/ecotaxa_cli_py/api/misc_api.py

@@ -5,7 +5,7 @@
 
     No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator)  # noqa: E501
 
-    The version of the OpenAPI document: 0.0.9
+    The version of the OpenAPI document: 0.0.13
     Generated by: https://openapi-generator.tech
 """
 

to_back/ecotaxa_cli_py/api/object_api.py

@@ -5,7 +5,7 @@
 
     No description provided (generated by Openapi Generator https://github.com/openapitools/openapi-generator)  # noqa: E501
 
-    The version of the OpenAPI document: 0.0.9
+    The version of the OpenAPI document: 0.0.13
     Generated by: https://openapi-generator.tech
 """