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post grpah error handling #7

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merged 3 commits into from
Jul 13, 2024
Merged

post grpah error handling #7

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4cc4586
Merge pull request #6 from eccenca/develop
muddymudskipper Jul 12, 2024
64d1dec
log posting result graph error
muddymudskipper Jul 13, 2024
2634c78
raise OSError on post result graph error
muddymudskipper Jul 13, 2024
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18 changes: 9 additions & 9 deletions cmem_plugin_reason/utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -101,12 +101,14 @@ def get_graphs_tree(graph_iris: tuple) -> dict:

def send_result(iri: str, filepath: Path) -> None:
"""Send result"""
post_streamed(
res = post_streamed(
iri,
str(filepath),
replace=True,
content_type="text/turtle",
)
if res.status_code != 204: # noqa: PLR2004
raise OSError(f"Error posting result graph (status code {res.status_code}).")


def post_provenance(plugin: WorkflowPlugin, prov: dict | None) -> None:
Expand All @@ -116,7 +118,6 @@ def post_provenance(plugin: WorkflowPlugin, prov: dict | None) -> None:
param_sparql = ""
for name, iri in prov["parameters"].items():
param_sparql += f'\n<{prov["plugin_iri"]}> <{iri}> "{plugin.__dict__[name]}" .'

insert_query = f"""
INSERT DATA {{
GRAPH <{plugin.output_graph_iri}> {{
Expand All @@ -130,7 +131,6 @@ def post_provenance(plugin: WorkflowPlugin, prov: dict | None) -> None:
}}
}}
"""

post_update(query=insert_query)


Expand Down Expand Up @@ -169,13 +169,13 @@ def get_provenance(plugin: WorkflowPlugin, context: ExecutionContext) -> dict |
)

parameter_query = f"""
SELECT ?parameter {{
GRAPH <{project_graph}> {{
<{plugin_iri}> ?parameter ?o .
FILTER(STRSTARTS(STR(?parameter), "https://vocab.eccenca.com/di/functions/param_"))
}}
SELECT ?parameter {{
GRAPH <{project_graph}> {{
<{plugin_iri}> ?parameter ?o .
FILTER(STRSTARTS(STR(?parameter), "https://vocab.eccenca.com/di/functions/param_"))
}}
"""
}}
"""

new_plugin_iri = f'{"_".join(plugin_iri.split("_")[:-1])}_{token_hex(8)}'
result = json.loads(post_select(query=parameter_query))
Expand Down
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