refactor parameter variable generation

cmem_plugin_reason/plugin_reason.py

@@ -19,6 +19,7 @@
 from cmem_plugin_base.dataintegration.ports import FixedNumberOfInputs, FixedSchemaPort
 from cmem_plugin_base.dataintegration.types import BoolParameterType
 from cmem_plugin_base.dataintegration.utils import setup_cmempy_user_access
+from inflection import underscore
 from urllib3.exceptions import InsecureRequestWarning
 
 from cmem_plugin_reason.utils import (
@@ -245,20 +246,7 @@ def __init__(  # noqa: PLR0913, C901
             errors += 'Invalid value for parameter "Maximum RAM Percentage". '
         if errors:
             raise ValueError(errors[:-1])
-        self.sub_class = sub_class
-        self.equivalent_class = equivalent_class
-        self.disjoint_classes = disjoint_classes
-        self.data_property_characteristic = data_property_characteristic
-        self.equivalent_data_properties = equivalent_data_properties
-        self.sub_data_property = sub_data_property
-        self.class_assertion = class_assertion
-        self.property_assertion = property_assertion
-        self.equivalent_object_property = equivalent_object_property
-        self.inverse_object_properties = inverse_object_properties
-        self.object_property_characteristic = object_property_characteristic
-        self.sub_object_property = sub_object_property
-        self.object_property_range = object_property_range
-        self.object_property_domain = object_property_domain
+
         self.data_graph_iri = data_graph_iri
         self.ontology_graph_iri = ontology_graph_iri
         self.output_graph_iri = output_graph_iri
@@ -267,6 +255,9 @@ def __init__(  # noqa: PLR0913, C901
         self.input_profiles = input_profiles
         self.max_ram_percentage = max_ram_percentage
 
+        for k, v in self.axioms.items():
+            self.__dict__[underscore(k)] = v
+
         if validate_profile and input_profiles:
             self.input_ports = FixedNumberOfInputs([FixedSchemaPort(self.generate_input_schema())])
         else:

cmem_plugin_reason/plugin_validate.py

@@ -144,13 +144,11 @@ def explain(self, graphs: dict) -> None:
         """Reason"""
         data_location = f"{self.temp}/{graphs[self.ontology_graph_iri]}"
         utctime = str(datetime.fromtimestamp(int(time()), tz=UTC))[:-6].replace(" ", "T") + "Z"
-
         cmd = (
             f'explain --input "{data_location}" '
             f"--reasoner {self.reasoner} -M inconsistency "
             f'--explanation "{self.temp}/{self.md_filename}"'
         )
-
         if self.output_graph_iri:
             cmd += (
                 f' annotate --ontology-iri "{self.output_graph_iri}" '
@@ -161,7 +159,6 @@ def explain(self, graphs: dict) -> None:
                 f'--typed-annotation dc:created "{utctime}" xsd:dateTime '
                 f'--output "{self.temp}/output.ttl"'
             )
-
         response = robot(cmd, self.max_ram_percentage)
         if response.returncode != 0:
             if response.stdout:

pyproject.toml

@@ -23,6 +23,7 @@ validators = "^0.33.0"
 pathvalidate = "^3.2.0"
 defusedxml = "^0.7.1"
 urllib3 = "^2.2.2"
+inflection = "^0.5.1"
 
 [tool.poetry.dependencies.cmem-plugin-base]
 version = "^4.5.0"